Analysis of interatomic Contacts of Structural Units in PDB entry:
1UJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UJW entry

There are 2 chains in PDB entry 1UJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4PHE 594
B
 TYR 323LYS 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1UJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 38Right-handed alpha
Helix 2
2
A
41 47Right-handed alpha
Helix 3
3
A
72 76Right-handed 310
Helix 4
4
A
86 89Right-handed 310
Helix 5
5
A
100 104Right-handed 310
Helix 6
6
A
114 119Right-handed alpha
Helix 7
7
A
397 403Right-handed alpha
Helix 8
8
B
327 332Right-handed alpha
Helix 9
9
B
332 375Right-handed alpha
Helix 10
10
B
376 379Right-handed 310
Helix 11
11
B
386 436Right-handed alpha
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There are 6 sheets in PDB entry 1UJW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
17 18anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
125 130anti-parallel
Strand 4
A
77 80parallel
Strand 5
A
83 84anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
64 68anti-parallel
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There are 26 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 472first strand
Strand 2
A
475 477anti-parallel
Strand 3
A
501 511anti-parallel
Strand 4
A
459 472first strand
Strand 5
A
429 441anti-parallel
Strand 6
A
413 426anti-parallel
Strand 7
A
383 394anti-parallel
Strand 8
A
366 380anti-parallel
Strand 9
A
351 362anti-parallel
Strand 10
A
334 348anti-parallel
Strand 11
A
309 322anti-parallel
Strand 12
A
289 305anti-parallel
Strand 13
A
261 277anti-parallel
Strand 14
A
242 257anti-parallel
Strand 15
A
214 228anti-parallel
Strand 16
A
198 209anti-parallel
Strand 17
A
164 174anti-parallel
Strand 18
A
149 159anti-parallel
Strand 19
A
137 145anti-parallel
Strand 20
A
585 594anti-parallel
Strand 21
A
559 566anti-parallel
Strand 22
A
544 554anti-parallel
Strand 23
A
514 523anti-parallel
Strand 24
A
501 511anti-parallel
Strand 25
A
480 488anti-parallel
Strand 26
A
501 511anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 447first strand
Strand 2
A
452 454anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 527first strand
Strand 2
A
540 541anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il