Analysis of interatomic Contacts of Structural Units in PDB entry:
1UKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UKJ entry

There are 8 chains in PDB entry 1UKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 210
A
 TYR 212ALA 398
B
 MET 501THR 710
B
 TYR 712ALA 898
C
 MET 1001THR 1210
C
 TYR 1212ALA 1398
D
 MET 1501THR 1710
D
 TYR 1712ALA 1898
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 1UKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 17Right-handed alpha
Helix 2
2
A
20 24Right-handed 310
Helix 3
3
A
42 49Right-handed alpha
Helix 4
4
A
64 79Right-handed alpha
Helix 5
5
A
88 101Right-handed alpha
Helix 6
6
A
114 124Right-handed alpha
Helix 7
7
A
125 128Right-handed 310
Helix 8
8
A
139 147Right-handed alpha
Helix 9
9
A
168 180Right-handed alpha
Helix 10
10
A
190 195Right-handed alpha
Helix 11
11
A
196 201Right-handed 310
Helix 12
12
A
227 237Right-handed alpha
Helix 13
13
A
248 259Right-handed alpha
Helix 14
14
A
261 281Right-handed alpha
Helix 15
15
A
299 307Right-handed alpha
Helix 16
16
A
320 332Right-handed alpha
Helix 17
17
A
360 365Right-handed alpha
Helix 18
18
A
382 397Right-handed alpha
Helix 19
19
B
509 517Right-handed alpha
Helix 20
20
B
520 524Right-handed 310
Helix 21
21
B
542 549Right-handed alpha
Helix 22
22
B
564 578Right-handed alpha
Helix 23
23
B
588 601Right-handed alpha
Helix 24
24
B
614 624Right-handed alpha
Helix 25
25
B
625 629Right-handed 310
Helix 26
26
B
639 647Right-handed alpha
Helix 27
27
B
668 680Right-handed alpha
Helix 28
28
B
696 701Right-handed 310
Helix 29
29
B
727 737Right-handed alpha
Helix 30
30
B
748 760Right-handed alpha
Helix 31
31
B
761 782Right-handed alpha
Helix 32
32
B
799 807Right-handed alpha
Helix 33
33
B
820 832Right-handed alpha
Helix 34
34
B
850 859Right-handed 310
Helix 35
35
B
860 867Right-handed alpha
Helix 36
36
B
882 898Right-handed alpha
Helix 37
37
C
1009 1017Right-handed alpha
Helix 38
38
C
1020 1024Right-handed 310
Helix 39
39
C
1042 1052Right-handed alpha
Helix 40
40
C
1064 1079Right-handed alpha
Helix 41
41
C
1088 1101Right-handed alpha
Helix 42
42
C
1114 1124Right-handed alpha
Helix 43
43
C
1125 1129Right-handed 310
Helix 44
44
C
1139 1145Right-handed alpha
Helix 45
45
C
1168 1179Right-handed alpha
Helix 46
46
C
1190 1195Right-handed alpha
Helix 47
47
C
1196 1201Right-handed 310
Helix 48
48
C
1227 1237Right-handed alpha
Helix 49
49
C
1248 1260Right-handed alpha
Helix 50
50
C
1261 1281Right-handed alpha
Helix 51
51
C
1299 1307Right-handed alpha
Helix 52
52
C
1320 1331Right-handed alpha
Helix 53
53
C
1360 1366Right-handed alpha
Helix 54
54
C
1382 1397Right-handed alpha
Helix 55
55
D
1509 1517Right-handed alpha
Helix 56
56
D
1520 1525Right-handed 310
Helix 57
57
D
1542 1551Right-handed alpha
Helix 58
58
D
1564 1579Right-handed alpha
Helix 59
59
D
1588 1601Right-handed alpha
Helix 60
60
D
1614 1624Right-handed alpha
Helix 61
61
D
1625 1629Right-handed 310
Helix 62
62
D
1639 1647Right-handed alpha
Helix 63
63
D
1668 1680Right-handed alpha
Helix 64
64
D
1690 1695Right-handed alpha
Helix 65
65
D
1696 1701Right-handed 310
Helix 66
66
D
1727 1737Right-handed alpha
Helix 67
67
D
1737 1742Right-handed alpha
Helix 68
68
D
1748 1760Right-handed alpha
Helix 69
69
D
1761 1782Right-handed alpha
Helix 70
70
D
1799 1807Right-handed alpha
Helix 71
71
D
1820 1830Right-handed alpha
Helix 72
72
D
1850 1854Right-handed 310
Helix 73
73
D
1860 1866Right-handed alpha
Helix 74
74
D
1882 1897Right-handed alpha
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There are 8 sheets in PDB entry 1UKJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
222 226anti-parallel
Strand 3
A
204 208anti-parallel
Strand 4
A
182 186parallel
Strand 5
A
151 157parallel
Strand 6
A
106 110parallel
Strand 7
A
131 135parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 290first strand
Strand 2
A
313 318anti-parallel
Strand 3
A
373 377anti-parallel
Strand 4
A
347 349anti-parallel
Strand 5
A
336 337parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 586first strand
Strand 2
B
722 726anti-parallel
Strand 3
B
704 708anti-parallel
Strand 4
B
682 686parallel
Strand 5
B
651 657parallel
Strand 6
B
606 609parallel
Strand 7
B
631 634parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
786 790first strand
Strand 2
B
813 818anti-parallel
Strand 3
B
873 877anti-parallel
Strand 4
B
847 849anti-parallel
Strand 5
B
836 837parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1082 1086first strand
Strand 2
C
1222 1226anti-parallel
Strand 3
C
1204 1207anti-parallel
Strand 4
C
1182 1186parallel
Strand 5
C
1151 1157parallel
Strand 6
C
1106 1109parallel
Strand 7
C
1131 1134parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1286 1290first strand
Strand 2
C
1313 1318anti-parallel
Strand 3
C
1373 1377anti-parallel
Strand 4
C
1347 1349anti-parallel
Strand 5
C
1336 1337parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1582 1586first strand
Strand 2
D
1722 1726anti-parallel
Strand 3
D
1704 1707anti-parallel
Strand 4
D
1682 1686parallel
Strand 5
D
1651 1657parallel
Strand 6
D
1606 1610parallel
Strand 7
D
1631 1635parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1786 1790first strand
Strand 2
D
1813 1818anti-parallel
Strand 3
D
1873 1877anti-parallel
Strand 4
D
1847 1849anti-parallel
Strand 5
D
1836 1837parallel
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