Analysis of interatomic Contacts of Structural Units in PDB entry:
1UKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UKW entry

There are 2 chains in PDB entry 1UKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 32ALA 410
B
 ILE 32ALA 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1UKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 54Right-handed alpha
Helix 2
2
A
55 57Right-handed 310
Helix 3
3
A
58 66Right-handed alpha
Helix 4
4
A
69 79Right-handed alpha
Helix 5
5
A
87 91Right-handed 310
Helix 6
6
A
96 111Right-handed alpha
Helix 7
7
A
111 132Right-handed alpha
Helix 8
8
A
133 142Right-handed alpha
Helix 9
9
A
143 145Right-handed 310
Helix 10
10
A
163 167Right-handed 310
Helix 11
11
A
203 209Right-handed 310
Helix 12
12
A
260 298Right-handed alpha
Helix 13
13
A
304 307Right-handed 310
Helix 14
14
A
308 339Right-handed alpha
Helix 15
15
A
342 369Right-handed alpha
Helix 16
16
A
370 374Right-handed 310
Helix 17
17
A
378 388Right-handed alpha
Helix 18
18
A
389 391Right-handed 310
Helix 19
19
A
395 409Right-handed alpha
Helix 20
20
B
37 54Right-handed alpha
Helix 21
21
B
54 66Right-handed alpha
Helix 22
22
B
69 79Right-handed alpha
Helix 23
23
B
87 91Right-handed 310
Helix 24
24
B
96 111Right-handed alpha
Helix 25
25
B
111 132Right-handed alpha
Helix 26
26
B
133 142Right-handed alpha
Helix 27
27
B
142 147Right-handed alpha
Helix 28
28
B
203 209Right-handed 310
Helix 29
29
B
260 298Right-handed alpha
Helix 30
30
B
304 307Right-handed 310
Helix 31
31
B
308 338Right-handed alpha
Helix 32
32
B
342 369Right-handed alpha
Helix 33
33
B
370 374Right-handed 310
Helix 34
34
B
378 387Right-handed alpha
Helix 35
35
B
388 391Right-handed 310
Helix 36
36
B
395 409Right-handed alpha
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There are 4 sheets in PDB entry 1UKW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
193 201parallel
Strand 3
A
211 217anti-parallel
Strand 4
A
254 255anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
177 188anti-parallel
Strand 3
A
239 250anti-parallel
Strand 4
A
223 227anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 154first strand
Strand 2
B
195 201parallel
Strand 3
B
211 217anti-parallel
Strand 4
B
254 255anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 174first strand
Strand 2
B
177 188anti-parallel
Strand 3
B
239 250anti-parallel
Strand 4
B
223 227anti-parallel
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