Analysis of interatomic Contacts of Structural Units in PDB entry:
1UL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UL1 entry

There are 6 chains in PDB entry 1UL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLY 2GLU 357
Y
 GLY 2GLU 359
Z
 GLY 2LYS 356
A
 MET 1GLU 259
B
 MET 1GLU 258
C
 MET 1ILE 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 1UL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
5 12Right-handed alpha
Helix 2
2
X
22 27Right-handed 310
Helix 3
3
X
35 44Right-handed alpha
Helix 4
4
X
61 77Right-handed alpha
Helix 5
5
X
137 149Right-handed alpha
Helix 6
6
X
158 170Right-handed alpha
Helix 7
7
X
180 185Right-handed alpha
Helix 8
8
X
209 217Right-handed alpha
Helix 9
9
X
219 232Right-handed alpha
Helix 10
10
X
242 253Right-handed alpha
Helix 11
11
X
255 261Right-handed alpha
Helix 12
12
X
275 285Right-handed alpha
Helix 13
13
X
290 294Right-handed 310
Helix 14
14
X
302 310Right-handed alpha
Helix 15
15
X
317 333Right-handed alpha
Helix 16
16
X
339 344Right-handed alpha
Helix 17
17
Y
5 14Right-handed alpha
Helix 18
18
Y
22 27Right-handed 310
Helix 19
19
Y
35 44Right-handed alpha
Helix 20
20
Y
61 77Right-handed alpha
Helix 21
21
Y
94 101Right-handed 310
Helix 22
22
Y
135 140Right-handed alpha
Helix 23
23
Y
140 145Right-handed alpha
Helix 24
24
Y
158 168Right-handed alpha
Helix 25
25
Y
180 185Right-handed alpha
Helix 26
26
Y
209 216Right-handed alpha
Helix 27
27
Y
219 232Right-handed alpha
Helix 28
28
Y
242 253Right-handed alpha
Helix 29
29
Y
255 263Right-handed alpha
Helix 30
30
Y
277 283Right-handed alpha
Helix 31
31
Y
302 308Right-handed alpha
Helix 32
32
Y
317 332Right-handed alpha
Helix 33
33
Z
5 14Right-handed alpha
Helix 34
34
Z
22 27Right-handed 310
Helix 35
35
Z
35 44Right-handed alpha
Helix 36
36
Z
61 76Right-handed alpha
Helix 37
37
Z
93 97Right-handed 310
Helix 38
38
Z
104 109Right-handed alpha
Helix 39
39
Z
137 149Right-handed alpha
Helix 40
40
Z
158 169Right-handed alpha
Helix 41
41
Z
179 183Right-handed 310
Helix 42
42
Z
209 217Right-handed alpha
Helix 43
43
Z
219 232Right-handed alpha
Helix 44
44
Z
243 247Right-handed 310
Helix 45
45
Z
275 283Right-handed alpha
Helix 46
46
Z
303 310Right-handed alpha
Helix 47
47
Z
317 330Right-handed alpha
Helix 48
48
A
9 18Right-handed alpha
Helix 49
49
A
55 57Right-handed 310
Helix 50
50
A
72 80Right-handed alpha
Helix 51
51
A
141 155Right-handed alpha
Helix 52
52
A
209 216Right-handed alpha
Helix 53
53
A
217 222Right-handed 310
Helix 54
54
B
9 21Right-handed alpha
Helix 55
55
B
71 80Right-handed alpha
Helix 56
56
B
141 152Right-handed alpha
Helix 57
57
B
209 216Right-handed alpha
Helix 58
58
B
217 222Right-handed 310
Helix 59
59
C
9 21Right-handed alpha
Helix 60
60
C
55 57Right-handed 310
Helix 61
61
C
71 81Right-handed alpha
Helix 62
62
C
141 152Right-handed alpha
Helix 63
63
C
190 194Right-handed 310
Helix 64
64
C
209 216Right-handed alpha
Helix 65
65
C
217 222Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 1UL1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
20 21first strand
Strand 2
X
204 208anti-parallel
Strand 3
X
189 192anti-parallel
Strand 4
X
174 176parallel
Strand 5
X
31 34parallel
Strand 6
X
81 85parallel
Strand 7
X
152 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
345 351first strand
Strand 2
A
122 127anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
18 21first strand
Strand 2
Y
204 208anti-parallel
Strand 3
Y
189 192anti-parallel
Strand 4
Y
174 176parallel
Strand 5
Y
30 34parallel
Strand 6
Y
80 85parallel
Strand 7
Y
152 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
348 351first strand
Strand 2
B
122 125anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
18 19first strand
Strand 2
Z
205 208anti-parallel
Strand 3
Z
189 192anti-parallel
Strand 4
Z
174 176parallel
Strand 5
Z
30 34parallel
Strand 6
Z
80 85parallel
Strand 7
Z
152 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
349 351first strand
Strand 2
C
122 124anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
110 117anti-parallel
Strand 6
B
176 183anti-parallel
Strand 7
B
166 173anti-parallel
Strand 8
B
157 161anti-parallel
Strand 9
B
204 208anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
25 30anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
46 53anti-parallel
Strand 5
A
245 251anti-parallel
Strand 6
A
235 241anti-parallel
Strand 7
A
224 228anti-parallel
Strand 8
A
136 140anti-parallel
Strand 9
A
196 197anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 208first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
166 173anti-parallel
Strand 4
A
176 183anti-parallel
Strand 5
C
110 117anti-parallel
Strand 6
C
98 104anti-parallel
Strand 7
C
87 92anti-parallel
Strand 8
C
2 6anti-parallel
Strand 9
C
59 62anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
88 92anti-parallel
Strand 3
B
98 101anti-parallel
Strand 4
B
110 117anti-parallel
Strand 5
C
176 183anti-parallel
Strand 6
C
166 173anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
26 30anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
46 53anti-parallel
Strand 5
B
245 251anti-parallel
Strand 6
B
235 241anti-parallel
Strand 7
B
224 229anti-parallel
Strand 8
B
135 140anti-parallel
Strand 9
B
196 199anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 70first strand
Strand 2
C
26 29anti-parallel
Strand 3
C
34 40anti-parallel
Strand 4
C
46 53anti-parallel
Strand 5
C
245 251anti-parallel
Strand 6
C
235 241anti-parallel
Strand 7
C
224 229anti-parallel
Strand 8
C
135 140anti-parallel
Strand 9
C
196 199anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 160first strand
Strand 2
C
205 208anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il