Analysis of interatomic Contacts of Structural Units in PDB entry:
1UM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UM9 entry

There are 4 chains in PDB entry 1UM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6LEU 367
B
 ALA 2TYR 324
C
 ARG 7LEU 367
D
 ALA 2TYR 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 1UM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 61Right-handed alpha
Helix 2
2
A
73 84Right-handed alpha
Helix 3
3
A
97 105Right-handed alpha
Helix 4
4
A
107 117Right-handed alpha
Helix 5
5
A
149 163Right-handed alpha
Helix 6
6
A
175 179Right-handed 310
Helix 7
7
A
180 194Right-handed alpha
Helix 8
8
A
221 228Right-handed 310
Helix 9
9
A
239 256Right-handed alpha
Helix 10
10
A
295 306Right-handed alpha
Helix 11
11
A
311 335Right-handed alpha
Helix 12
12
A
340 346Right-handed 310
Helix 13
13
A
353 367Right-handed alpha
Helix 14
14
B
5 21Right-handed alpha
Helix 15
15
B
43 49Right-handed alpha
Helix 16
16
B
59 74Right-handed alpha
Helix 17
17
B
83 89Right-handed 310
Helix 18
18
B
90 97Right-handed alpha
Helix 19
19
B
100 105Right-handed alpha
Helix 20
20
B
125 129Right-handed 310
Helix 21
21
B
133 139Right-handed alpha
Helix 22
22
B
150 164Right-handed alpha
Helix 23
23
B
175 177Right-handed 310
Helix 24
24
B
210 212Right-handed 310
Helix 25
25
B
213 227Right-handed alpha
Helix 26
26
B
243 255Right-handed alpha
Helix 27
27
B
268 282Right-handed alpha
Helix 28
28
B
283 285Right-handed 310
Helix 29
29
B
303 308Right-handed alpha
Helix 30
30
B
310 324Right-handed alpha
Helix 31
31
C
34 61Right-handed alpha
Helix 32
32
C
73 84Right-handed alpha
Helix 33
33
C
97 105Right-handed alpha
Helix 34
34
C
107 117Right-handed alpha
Helix 35
35
C
149 163Right-handed alpha
Helix 36
36
C
175 179Right-handed 310
Helix 37
37
C
180 194Right-handed alpha
Helix 38
38
C
221 228Right-handed 310
Helix 39
39
C
239 256Right-handed alpha
Helix 40
40
C
295 307Right-handed alpha
Helix 41
41
C
311 336Right-handed alpha
Helix 42
42
C
340 346Right-handed 310
Helix 43
43
C
353 365Right-handed alpha
Helix 44
44
D
5 21Right-handed alpha
Helix 45
45
D
43 49Right-handed alpha
Helix 46
46
D
59 74Right-handed alpha
Helix 47
47
D
83 89Right-handed 310
Helix 48
48
D
90 97Right-handed alpha
Helix 49
49
D
100 105Right-handed alpha
Helix 50
50
D
133 139Right-handed alpha
Helix 51
51
D
150 164Right-handed alpha
Helix 52
52
D
175 177Right-handed 310
Helix 53
53
D
210 212Right-handed 310
Helix 54
54
D
213 227Right-handed alpha
Helix 55
55
D
243 255Right-handed alpha
Helix 56
56
D
268 282Right-handed alpha
Helix 57
57
D
283 285Right-handed 310
Helix 58
58
D
303 308Right-handed alpha
Helix 59
59
D
310 324Right-handed alpha
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There are 9 sheets in PDB entry 1UM9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
169 173parallel
Strand 3
A
197 204parallel
Strand 4
A
261 267parallel
Strand 5
A
232 236parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
182 183anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
24 28parallel
Strand 3
B
76 80parallel
Strand 4
B
114 119parallel
Strand 5
B
168 173parallel
Strand 6
B
144 147parallel
Strand 7
B
238 240anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 200first strand
Strand 2
B
231 235anti-parallel
Strand 3
B
205 209parallel
Strand 4
B
257 264parallel
Strand 5
B
290 294parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
275 276anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 92first strand
Strand 2
C
169 173parallel
Strand 3
C
197 204parallel
Strand 4
C
261 267parallel
Strand 5
C
232 236parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 4first strand
Strand 2
D
182 183anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 55first strand
Strand 2
D
24 28parallel
Strand 3
D
76 80parallel
Strand 4
D
114 119parallel
Strand 5
D
168 173parallel
Strand 6
D
144 147parallel
Strand 7
D
238 240anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
197 200first strand
Strand 2
D
231 235anti-parallel
Strand 3
D
205 209parallel
Strand 4
D
257 264parallel
Strand 5
D
290 294parallel
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