Analysis of interatomic Contacts of Structural Units in PDB entry:
1UMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UMD entry

There are 4 chains in PDB entry 1UMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6LEU 367
B
 ALA 2TYR 324
C
 HIS 6GLU 366
D
 ALA 2TYR 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 1UMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 61Right-handed alpha
Helix 2
2
A
73 84Right-handed alpha
Helix 3
3
A
97 105Right-handed alpha
Helix 4
4
A
107 117Right-handed alpha
Helix 5
5
A
149 163Right-handed alpha
Helix 6
6
A
176 179Right-handed 310
Helix 7
7
A
180 193Right-handed alpha
Helix 8
8
A
212 216Right-handed alpha
Helix 9
9
A
221 228Right-handed 310
Helix 10
10
A
239 256Right-handed alpha
Helix 11
11
A
278 282Right-handed 310
Helix 12
12
A
284 293Right-handed alpha
Helix 13
13
A
295 306Right-handed alpha
Helix 14
14
A
311 336Right-handed alpha
Helix 15
15
A
340 346Right-handed 310
Helix 16
16
A
353 367Right-handed alpha
Helix 17
17
B
5 21Right-handed alpha
Helix 18
18
B
43 49Right-handed alpha
Helix 19
19
B
59 74Right-handed alpha
Helix 20
20
B
83 89Right-handed 310
Helix 21
21
B
90 97Right-handed alpha
Helix 22
22
B
100 105Right-handed alpha
Helix 23
23
B
125 129Right-handed 310
Helix 24
24
B
133 139Right-handed alpha
Helix 25
25
B
150 164Right-handed alpha
Helix 26
26
B
175 177Right-handed 310
Helix 27
27
B
210 212Right-handed 310
Helix 28
28
B
213 227Right-handed alpha
Helix 29
29
B
243 255Right-handed alpha
Helix 30
30
B
268 282Right-handed alpha
Helix 31
31
B
283 285Right-handed 310
Helix 32
32
B
303 308Right-handed alpha
Helix 33
33
B
310 324Right-handed alpha
Helix 34
34
C
34 61Right-handed alpha
Helix 35
35
C
73 84Right-handed alpha
Helix 36
36
C
97 105Right-handed alpha
Helix 37
37
C
107 117Right-handed alpha
Helix 38
38
C
149 164Right-handed alpha
Helix 39
39
C
176 179Right-handed 310
Helix 40
40
C
180 193Right-handed alpha
Helix 41
41
C
212 216Right-handed alpha
Helix 42
42
C
221 228Right-handed 310
Helix 43
43
C
239 256Right-handed alpha
Helix 44
44
C
284 293Right-handed alpha
Helix 45
45
C
295 307Right-handed alpha
Helix 46
46
C
311 336Right-handed alpha
Helix 47
47
C
340 346Right-handed 310
Helix 48
48
C
353 365Right-handed alpha
Helix 49
49
D
5 21Right-handed alpha
Helix 50
50
D
43 49Right-handed alpha
Helix 51
51
D
59 74Right-handed alpha
Helix 52
52
D
83 89Right-handed 310
Helix 53
53
D
90 97Right-handed alpha
Helix 54
54
D
100 105Right-handed alpha
Helix 55
55
D
125 129Right-handed 310
Helix 56
56
D
133 139Right-handed alpha
Helix 57
57
D
150 164Right-handed alpha
Helix 58
58
D
175 177Right-handed 310
Helix 59
59
D
210 212Right-handed 310
Helix 60
60
D
213 227Right-handed alpha
Helix 61
61
D
243 255Right-handed alpha
Helix 62
62
D
268 282Right-handed alpha
Helix 63
63
D
283 285Right-handed 310
Helix 64
64
D
303 308Right-handed alpha
Helix 65
65
D
310 324Right-handed alpha
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There are 10 sheets in PDB entry 1UMD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
169 174parallel
Strand 3
A
197 203parallel
Strand 4
A
261 266parallel
Strand 5
A
232 236parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
210 211anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
182 183anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
24 28parallel
Strand 3
B
76 80parallel
Strand 4
B
114 119parallel
Strand 5
B
168 173parallel
Strand 6
B
144 147parallel
Strand 7
B
238 240anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 200first strand
Strand 2
B
231 235anti-parallel
Strand 3
B
205 209parallel
Strand 4
B
257 264parallel
Strand 5
B
290 294parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 92first strand
Strand 2
C
169 174parallel
Strand 3
C
197 203parallel
Strand 4
C
261 266parallel
Strand 5
C
232 236parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 207first strand
Strand 2
C
210 211anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 4first strand
Strand 2
D
182 183anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 55first strand
Strand 2
D
24 28parallel
Strand 3
D
76 80parallel
Strand 4
D
114 119parallel
Strand 5
D
168 173parallel
Strand 6
D
144 147parallel
Strand 7
D
238 240anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
197 200first strand
Strand 2
D
231 235anti-parallel
Strand 3
D
205 209parallel
Strand 4
D
257 264parallel
Strand 5
D
290 294parallel
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