Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1UN6 entry
There are 5 chains in PDB entry 1UN6
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
B
|
MET 104 | ASP 190 |
C
|
MET 104 | ASP 190 |
D
|
LEU 133 | ASP 190 |
E
|
G 4 | C 115 |
F
|
G 4 | C 115 |
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There are 8
helices in PDB entry 1UN6. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
BH4 | B
| 119 |
130 | Right-handed alpha |
Helix 2 |
BH5 | B
| 149 |
160 | Right-handed alpha |
Helix 3 |
BH6 | B
| 177 |
188 | Right-handed alpha |
Helix 4 |
CH4 | C
| 119 |
130 | Right-handed alpha |
Helix 5 |
CH5 | C
| 149 |
160 | Right-handed alpha |
Helix 6 |
CH6 | C
| 177 |
188 | Right-handed alpha |
Helix 7 |
DH5 | D
| 149 |
160 | Right-handed alpha |
Helix 8 |
DH6 | D
| 177 |
188 | Right-handed alpha |
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There are
8 sheets in PDB entry 1UN6. Click on sheet of
interest to get list of strands forming it:
BA,
BB,
BC,
CA,
CB,
CC,
DB,
C,
There are 2
strands in BA sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 105 |
106 | first strand |
Strand 2 |
B
| 115 |
116 | anti-parallel |
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There are 2
strands in BB sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 135 |
136 | first strand |
Strand 2 |
B
| 145 |
146 | anti-parallel |
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There are 2
strands in BC sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 162 |
163 | first strand |
Strand 2 |
B
| 173 |
174 | anti-parallel |
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There are 2
strands in CA sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
C
| 105 |
106 | first strand |
Strand 2 |
C
| 115 |
116 | anti-parallel |
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There are 2
strands in CB sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
C
| 135 |
136 | first strand |
Strand 2 |
C
| 145 |
146 | anti-parallel |
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There are 2
strands in CC sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
C
| 162 |
163 | first strand |
Strand 2 |
C
| 173 |
174 | anti-parallel |
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There are 2
strands in DB sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
D
| 135 |
136 | first strand |
Strand 2 |
D
| 145 |
146 | anti-parallel |
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There are 2
strands in C sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
D
| 162 |
163 | first strand |
Strand 2 |
D
| 173 |
174 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il