Analysis of interatomic Contacts of Structural Units in PDB entry:
1UPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UPE entry

There is 1 chain in PDB entry 1UPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1UPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 34Right-handed alpha
Helix 2
2
A
39 55Right-handed alpha
Helix 3
3
A
56 58Right-handed 310
Helix 4
4
A
59 70Right-handed alpha
Helix 5
5
A
72 107Right-handed alpha
Helix 6
6
A
118 137Right-handed alpha
Helix 7
7
A
137 142Right-handed alpha
Helix 8
8
A
174 185Right-handed alpha
Helix 9
9
A
186 202Right-handed alpha
Helix 10
10
A
224 257Right-handed alpha
Helix 11
11
A
266 279Right-handed alpha
Helix 12
12
A
279 291Right-handed alpha
Helix 13
13
A
292 304Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 1UPE.

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
166 168anti-parallel
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