Analysis of interatomic Contacts of Structural Units in PDB entry:
1UPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1UPM entry

There are 24 chains in PDB entry 1UPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 9THR 200
B
 ASP 202VAL 475
C
 MET 1TYR 123
E
 ALA 9THR 200
E
 ASP 202VAL 475
F
 MET 1TYR 123
H
 ALA 9THR 200
H
 ASP 202VAL 475
I
 MET 1TYR 123
K
 ALA 9THR 200
K
 ASP 202VAL 475
L
 ALA 9THR 200
L
 ASP 202VAL 475
M
 MET 1TYR 123
O
 ALA 9THR 200
O
 ASP 202VAL 475
P
 MET 1TYR 123
R
 ALA 9THR 200
R
 ASP 202VAL 475
S
 MET 1TYR 123
T
 MET 1TYR 123
V
 ALA 9THR 200
V
 ASP 202VAL 475
W
 MET 1TYR 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are200 helices in PDB entry 1UPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
20 25Right-handed alpha
Helix 2
2
B
49 61Right-handed alpha
Helix 3
3
B
69 75Right-handed 310
Helix 4
4
B
76 81Right-handed alpha
Helix 5
5
B
104 108Right-handed 310
Helix 6
6
B
112 121Right-handed alpha
Helix 7
7
B
123 126Right-handed 310
Helix 8
8
B
141 146Right-handed alpha
Helix 9
9
B
154 163Right-handed alpha
Helix 10
10
B
181 195Right-handed alpha
Helix 11
11
B
213 233Right-handed alpha
Helix 12
12
B
246 261Right-handed alpha
Helix 13
13
B
269 288Right-handed alpha
Helix 14
14
B
297 303Right-handed alpha
Helix 15
15
B
310 322Right-handed alpha
Helix 16
16
B
338 351Right-handed alpha
Helix 17
17
B
358 361Right-handed 310
Helix 18
18
B
383 385Right-handed 310
Helix 19
19
B
386 395Right-handed alpha
Helix 20
20
B
403 408Right-handed alpha
Helix 21
21
B
412 433Right-handed alpha
Helix 22
22
B
436 450Right-handed alpha
Helix 23
23
B
452 463Right-handed alpha
Helix 24
24
C
22 36Right-handed alpha
Helix 25
25
C
79 94Right-handed alpha
Helix 26
26
E
20 25Right-handed alpha
Helix 27
27
E
49 61Right-handed alpha
Helix 28
28
E
69 75Right-handed 310
Helix 29
29
E
76 81Right-handed alpha
Helix 30
30
E
104 108Right-handed 310
Helix 31
31
E
112 122Right-handed alpha
Helix 32
32
E
123 126Right-handed 310
Helix 33
33
E
141 146Right-handed alpha
Helix 34
34
E
154 163Right-handed alpha
Helix 35
35
E
181 195Right-handed alpha
Helix 36
36
E
213 233Right-handed alpha
Helix 37
37
E
246 261Right-handed alpha
Helix 38
38
E
269 288Right-handed alpha
Helix 39
39
E
297 303Right-handed alpha
Helix 40
40
E
310 322Right-handed alpha
Helix 41
41
E
338 351Right-handed alpha
Helix 42
42
E
358 361Right-handed 310
Helix 43
43
E
383 385Right-handed 310
Helix 44
44
E
386 395Right-handed alpha
Helix 45
45
E
403 408Right-handed alpha
Helix 46
46
E
412 433Right-handed alpha
Helix 47
47
E
436 450Right-handed alpha
Helix 48
48
E
452 463Right-handed alpha
Helix 49
49
F
22 36Right-handed alpha
Helix 50
50
F
79 94Right-handed alpha
Helix 51
51
H
20 25Right-handed alpha
Helix 52
52
H
49 61Right-handed alpha
Helix 53
53
H
69 75Right-handed 310
Helix 54
54
H
76 81Right-handed alpha
Helix 55
55
H
104 108Right-handed 310
Helix 56
56
H
112 122Right-handed alpha
Helix 57
57
H
123 126Right-handed 310
Helix 58
58
H
141 146Right-handed alpha
Helix 59
59
H
154 163Right-handed alpha
Helix 60
60
H
181 195Right-handed alpha
Helix 61
61
H
213 233Right-handed alpha
Helix 62
62
H
246 261Right-handed alpha
Helix 63
63
H
269 288Right-handed alpha
Helix 64
64
H
297 303Right-handed alpha
Helix 65
65
H
310 322Right-handed alpha
Helix 66
66
H
338 351Right-handed alpha
Helix 67
67
H
358 361Right-handed 310
Helix 68
68
H
383 385Right-handed 310
Helix 69
69
H
386 395Right-handed alpha
Helix 70
70
H
403 408Right-handed alpha
Helix 71
71
H
412 433Right-handed alpha
Helix 72
72
H
436 450Right-handed alpha
Helix 73
73
H
452 463Right-handed alpha
Helix 74
74
I
22 36Right-handed alpha
Helix 75
75
I
79 94Right-handed alpha
Helix 76
76
K
20 25Right-handed alpha
Helix 77
77
K
49 61Right-handed alpha
Helix 78
78
K
69 75Right-handed 310
Helix 79
79
K
76 81Right-handed alpha
Helix 80
80
K
104 108Right-handed 310
Helix 81
81
K
112 121Right-handed alpha
Helix 82
82
K
123 126Right-handed 310
Helix 83
83
K
141 146Right-handed alpha
Helix 84
84
K
154 163Right-handed alpha
Helix 85
85
K
181 194Right-handed alpha
Helix 86
86
K
213 233Right-handed alpha
Helix 87
87
K
246 261Right-handed alpha
Helix 88
88
K
269 288Right-handed alpha
Helix 89
89
K
297 303Right-handed alpha
Helix 90
90
K
310 322Right-handed alpha
Helix 91
91
K
338 351Right-handed alpha
Helix 92
92
K
358 361Right-handed 310
Helix 93
93
K
383 385Right-handed 310
Helix 94
94
K
386 395Right-handed alpha
Helix 95
95
K
403 408Right-handed alpha
Helix 96
96
K
412 433Right-handed alpha
Helix 97
97
K
436 450Right-handed alpha
Helix 98
98
K
452 463Right-handed alpha
Helix 99
99
L
20 25Right-handed alpha
Helix 100
100
L
49 61Right-handed alpha
Helix 101
101
L
69 75Right-handed 310
Helix 102
102
L
76 81Right-handed alpha
Helix 103
103
L
104 108Right-handed 310
Helix 104
104
L
112 121Right-handed alpha
Helix 105
105
L
123 126Right-handed 310
Helix 106
106
L
141 146Right-handed alpha
Helix 107
107
L
154 163Right-handed alpha
Helix 108
108
L
181 194Right-handed alpha
Helix 109
109
L
213 233Right-handed alpha
Helix 110
110
L
246 261Right-handed alpha
Helix 111
111
L
269 288Right-handed alpha
Helix 112
112
L
297 303Right-handed alpha
Helix 113
113
L
310 322Right-handed alpha
Helix 114
114
L
338 351Right-handed alpha
Helix 115
115
L
358 361Right-handed 310
Helix 116
116
L
383 385Right-handed 310
Helix 117
117
L
386 395Right-handed alpha
Helix 118
118
L
403 408Right-handed alpha
Helix 119
119
L
412 433Right-handed alpha
Helix 120
120
L
436 450Right-handed alpha
Helix 121
121
L
452 463Right-handed alpha
Helix 122
122
M
22 36Right-handed alpha
Helix 123
123
M
79 94Right-handed alpha
Helix 124
124
O
20 25Right-handed alpha
Helix 125
125
O
49 61Right-handed alpha
Helix 126
126
O
69 75Right-handed 310
Helix 127
127
O
76 81Right-handed alpha
Helix 128
128
O
104 108Right-handed 310
Helix 129
129
O
112 121Right-handed alpha
Helix 130
130
O
123 126Right-handed 310
Helix 131
131
O
141 146Right-handed alpha
Helix 132
132
O
154 163Right-handed alpha
Helix 133
133
O
181 195Right-handed alpha
Helix 134
134
O
213 233Right-handed alpha
Helix 135
135
O
246 261Right-handed alpha
Helix 136
136
O
269 288Right-handed alpha
Helix 137
137
O
297 303Right-handed alpha
Helix 138
138
O
310 322Right-handed alpha
Helix 139
139
O
338 351Right-handed alpha
Helix 140
140
O
358 361Right-handed 310
Helix 141
141
O
383 385Right-handed 310
Helix 142
142
O
386 395Right-handed alpha
Helix 143
143
O
403 408Right-handed alpha
Helix 144
144
O
412 433Right-handed alpha
Helix 145
145
O
436 449Right-handed alpha
Helix 146
146
O
452 463Right-handed alpha
Helix 147
147
P
22 36Right-handed alpha
Helix 148
148
P
79 94Right-handed alpha
Helix 149
149
R
20 25Right-handed alpha
Helix 150
150
R
49 61Right-handed alpha
Helix 151
151
R
69 75Right-handed 310
Helix 152
152
R
76 81Right-handed alpha
Helix 153
153
R
104 108Right-handed 310
Helix 154
154
R
112 121Right-handed alpha
Helix 155
155
R
123 126Right-handed 310
Helix 156
156
R
141 146Right-handed alpha
Helix 157
157
R
154 163Right-handed alpha
Helix 158
158
R
181 194Right-handed alpha
Helix 159
159
R
213 233Right-handed alpha
Helix 160
160
R
246 261Right-handed alpha
Helix 161
161
R
269 288Right-handed alpha
Helix 162
162
R
297 303Right-handed alpha
Helix 163
163
R
310 322Right-handed alpha
Helix 164
164
R
338 351Right-handed alpha
Helix 165
165
R
358 361Right-handed 310
Helix 166
166
R
383 385Right-handed 310
Helix 167
167
R
386 395Right-handed alpha
Helix 168
168
R
403 408Right-handed alpha
Helix 169
169
R
412 433Right-handed alpha
Helix 170
170
R
436 450Right-handed alpha
Helix 171
171
R
452 463Right-handed alpha
Helix 172
172
S
22 36Right-handed alpha
Helix 173
173
S
79 94Right-handed alpha
Helix 174
174
T
22 36Right-handed alpha
Helix 175
175
T
79 94Right-handed alpha
Helix 176
176
V
20 25Right-handed alpha
Helix 177
177
V
49 61Right-handed alpha
Helix 178
178
V
69 75Right-handed 310
Helix 179
179
V
76 81Right-handed alpha
Helix 180
180
V
104 108Right-handed 310
Helix 181
181
V
112 122Right-handed alpha
Helix 182
182
V
123 126Right-handed 310
Helix 183
183
V
141 146Right-handed alpha
Helix 184
184
V
154 163Right-handed alpha
Helix 185
185
V
181 195Right-handed alpha
Helix 186
186
V
213 233Right-handed alpha
Helix 187
187
V
246 261Right-handed alpha
Helix 188
188
V
269 288Right-handed alpha
Helix 189
189
V
297 303Right-handed alpha
Helix 190
190
V
310 322Right-handed alpha
Helix 191
191
V
338 351Right-handed alpha
Helix 192
192
V
358 361Right-handed 310
Helix 193
193
V
383 385Right-handed 310
Helix 194
194
V
386 395Right-handed alpha
Helix 195
195
V
403 408Right-handed alpha
Helix 196
196
V
412 433Right-handed alpha
Helix 197
197
V
436 450Right-handed alpha
Helix 198
198
V
452 463Right-handed alpha
Helix 199
199
W
22 36Right-handed alpha
Helix 200
200
W
79 94Right-handed alpha
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There are 32 sheets in PDB entry 1UPM. Click on sheet of interest to get list of strands forming it: BA, BB, BC, CA, EA, EB, EC, FA, HA, HB, HC, IA, KA, KB, KC, LA, LB, LC, MA, OA, OB, OC, PA, RA, RB, RC, SA, TA, VA, VB, VC, WA,

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 89first strand
Strand 2
B
97 103anti-parallel
Strand 3
B
36 44anti-parallel
Strand 4
B
130 139anti-parallel
Strand 5
B
308 309parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
399 401parallel
Strand 3
B
375 379parallel
Strand 4
B
325 327parallel
Strand 5
B
290 294parallel
Strand 6
B
264 268parallel
Strand 7
B
237 241parallel
Strand 8
B
199 201parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 354first strand
Strand 2
B
366 367anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 70first strand
Strand 2
C
39 45anti-parallel
Strand 3
C
98 105anti-parallel
Strand 4
C
110 118anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 89first strand
Strand 2
E
97 103anti-parallel
Strand 3
E
36 44anti-parallel
Strand 4
E
130 139anti-parallel
Strand 5
E
308 309parallel
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There are 8 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
169 171first strand
Strand 2
E
399 401parallel
Strand 3
E
375 379parallel
Strand 4
E
325 327parallel
Strand 5
E
290 294parallel
Strand 6
E
264 268parallel
Strand 7
E
237 241parallel
Strand 8
E
199 201parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
353 354first strand
Strand 2
E
366 367anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
68 70first strand
Strand 2
F
39 45anti-parallel
Strand 3
F
98 105anti-parallel
Strand 4
F
110 118anti-parallel
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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
83 89first strand
Strand 2
H
97 103anti-parallel
Strand 3
H
36 44anti-parallel
Strand 4
H
130 139anti-parallel
Strand 5
H
308 309parallel
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There are 8 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
169 171first strand
Strand 2
H
399 401parallel
Strand 3
H
375 379parallel
Strand 4
H
325 327parallel
Strand 5
H
290 294parallel
Strand 6
H
264 268parallel
Strand 7
H
237 241parallel
Strand 8
H
199 201parallel
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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
353 354first strand
Strand 2
H
366 367anti-parallel
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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
68 70first strand
Strand 2
I
39 45anti-parallel
Strand 3
I
98 105anti-parallel
Strand 4
I
110 118anti-parallel
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There are 5 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
83 89first strand
Strand 2
K
97 103anti-parallel
Strand 3
K
36 44anti-parallel
Strand 4
K
130 139anti-parallel
Strand 5
K
308 309parallel
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There are 8 strands in KB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
169 171first strand
Strand 2
K
399 401parallel
Strand 3
K
375 379parallel
Strand 4
K
325 327parallel
Strand 5
K
290 294parallel
Strand 6
K
264 268parallel
Strand 7
K
237 241parallel
Strand 8
K
199 201parallel
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There are 2 strands in KC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
353 354first strand
Strand 2
K
366 367anti-parallel
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There are 5 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
83 89first strand
Strand 2
L
97 103anti-parallel
Strand 3
L
36 44anti-parallel
Strand 4
L
130 139anti-parallel
Strand 5
L
308 309parallel
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There are 8 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
169 171first strand
Strand 2
L
399 401parallel
Strand 3
L
375 379parallel
Strand 4
L
325 327parallel
Strand 5
L
290 294parallel
Strand 6
L
264 268parallel
Strand 7
L
237 241parallel
Strand 8
L
199 201parallel
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There are 2 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
353 354first strand
Strand 2
L
366 367anti-parallel
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There are 4 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
68 69first strand
Strand 2
M
39 45anti-parallel
Strand 3
M
98 105anti-parallel
Strand 4
M
110 118anti-parallel
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There are 5 strands in OA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
83 89first strand
Strand 2
O
97 103anti-parallel
Strand 3
O
36 44anti-parallel
Strand 4
O
130 139anti-parallel
Strand 5
O
308 309parallel
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There are 8 strands in OB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
169 171first strand
Strand 2
O
399 401parallel
Strand 3
O
375 379parallel
Strand 4
O
325 327parallel
Strand 5
O
290 294parallel
Strand 6
O
264 268parallel
Strand 7
O
237 241parallel
Strand 8
O
199 201parallel
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There are 2 strands in OC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
353 354first strand
Strand 2
O
366 367anti-parallel
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There are 4 strands in PA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
68 70first strand
Strand 2
P
39 45anti-parallel
Strand 3
P
98 105anti-parallel
Strand 4
P
110 118anti-parallel
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There are 5 strands in RA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
83 89first strand
Strand 2
R
97 103anti-parallel
Strand 3
R
36 44anti-parallel
Strand 4
R
130 139anti-parallel
Strand 5
R
308 309parallel
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There are 8 strands in RB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
169 171first strand
Strand 2
R
399 401parallel
Strand 3
R
375 379parallel
Strand 4
R
325 327parallel
Strand 5
R
290 294parallel
Strand 6
R
264 268parallel
Strand 7
R
237 241parallel
Strand 8
R
199 201parallel
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There are 2 strands in RC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
353 354first strand
Strand 2
R
366 367anti-parallel
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There are 4 strands in SA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
68 70first strand
Strand 2
S
39 45anti-parallel
Strand 3
S
98 105anti-parallel
Strand 4
S
110 118anti-parallel
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There are 4 strands in TA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
68 70first strand
Strand 2
T
39 45anti-parallel
Strand 3
T
98 105anti-parallel
Strand 4
T
110 118anti-parallel
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There are 5 strands in VA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
83 89first strand
Strand 2
V
97 103anti-parallel
Strand 3
V
36 44anti-parallel
Strand 4
V
130 139anti-parallel
Strand 5
V
308 309parallel
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There are 8 strands in VB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
169 171first strand
Strand 2
V
399 401parallel
Strand 3
V
375 379parallel
Strand 4
V
325 327parallel
Strand 5
V
290 294parallel
Strand 6
V
264 268parallel
Strand 7
V
237 241parallel
Strand 8
V
199 201parallel
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There are 2 strands in VC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
353 354first strand
Strand 2
V
366 367anti-parallel
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There are 4 strands in WA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
68 70first strand
Strand 2
W
39 45anti-parallel
Strand 3
W
98 105anti-parallel
Strand 4
W
110 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il