Analysis of interatomic Contacts of Structural Units in PDB entry:
1V0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V0D entry

There is 1 chain in PDB entry 1V0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 85SER 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1V0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 95Right-handed alpha
Helix 2
2
A
102 112Right-handed alpha
Helix 3
3
A
115 130Right-handed alpha
Helix 4
4
A
154 176Right-handed alpha
Helix 5
5
A
177 181Right-handed 310
Helix 6
6
A
185 203Right-handed alpha
Helix 7
7
A
204 211Right-handed 310
Helix 8
8
A
245 248Right-handed 310
Helix 9
9
A
249 256Right-handed alpha
Helix 10
10
A
270 282Right-handed alpha
Helix 11
11
A
286 296Right-handed alpha
Helix 12
12
A
304 308Right-handed 310
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There are 2 sheets in PDB entry 1V0D. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
243 244anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
300 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il