Analysis of interatomic Contacts of Structural Units in PDB entry:
1V0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V0P entry

There are 2 chains in PDB entry 1V0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 286
B
 GLU 2GLU 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1V0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 53Right-handed alpha
Helix 2
2
A
54 57Right-handed 310
Helix 3
3
A
86 92Right-handed alpha
Helix 4
4
A
98 119Right-handed alpha
Helix 5
5
A
127 129Right-handed 310
Helix 6
6
A
145 151Right-handed alpha
Helix 7
7
A
168 173Right-handed alpha
Helix 8
8
A
180 197Right-handed alpha
Helix 9
9
A
205 218Right-handed alpha
Helix 10
10
A
227 231Right-handed 310
Helix 11
11
A
245 249Right-handed 310
Helix 12
12
A
254 265Right-handed alpha
Helix 13
13
A
268 272Right-handed 310
Helix 14
14
A
274 280Right-handed alpha
Helix 15
15
A
281 285Right-handed 310
Helix 16
16
B
44 54Right-handed alpha
Helix 17
17
B
55 57Right-handed 310
Helix 18
18
B
86 93Right-handed alpha
Helix 19
19
B
98 119Right-handed alpha
Helix 20
20
B
127 129Right-handed 310
Helix 21
21
B
145 150Right-handed alpha
Helix 22
22
B
168 173Right-handed alpha
Helix 23
23
B
180 197Right-handed alpha
Helix 24
24
B
205 218Right-handed alpha
Helix 25
25
B
227 231Right-handed 310
Helix 26
26
B
245 250Right-handed alpha
Helix 27
27
B
254 265Right-handed alpha
Helix 28
28
B
268 272Right-handed 310
Helix 29
29
B
274 280Right-handed alpha
Helix 30
30
B
281 285Right-handed 310
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There are 4 sheets in PDB entry 1V0P. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 13first strand
Strand 2
A
16 23anti-parallel
Strand 3
A
28 34anti-parallel
Strand 4
A
75 80anti-parallel
Strand 5
A
65 70anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
131 133anti-parallel
Strand 3
A
139 141anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 13first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
28 32anti-parallel
Strand 4
B
76 79anti-parallel
Strand 5
B
65 69anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
131 133anti-parallel
Strand 3
B
139 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il