Analysis of interatomic Contacts of Structural Units in PDB entry:
1V0S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V0S entry

There is 1 chain in PDB entry 1V0S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ALA 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1V0S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 22Right-handed alpha
Helix 2
2
A
23 25Right-handed 310
Helix 3
3
A
44 47Right-handed 310
Helix 4
4
A
64 80Right-handed alpha
Helix 5
5
A
95 112Right-handed alpha
Helix 6
6
A
132 146Right-handed alpha
Helix 7
7
A
147 150Right-handed 310
Helix 8
8
A
189 194Right-handed alpha
Helix 9
9
A
209 229Right-handed alpha
Helix 10
10
A
249 255Right-handed alpha
Helix 11
11
A
313 319Right-handed alpha
Helix 12
12
A
320 332Right-handed alpha
Helix 13
13
A
355 368Right-handed alpha
Helix 14
14
A
378 382Right-handed 310
Helix 15
15
A
396 412Right-handed alpha
Helix 16
16
A
413 425Right-handed alpha
Helix 17
17
A
480 491Right-handed alpha
Helix 18
18
A
491 500Right-handed alpha
Helix 19
19
A
501 503Right-handed 310
Helix 20
20
A
508 510Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 1V0S. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
202 208anti-parallel
Strand 3
A
30 38anti-parallel
Strand 4
A
265 271anti-parallel
Strand 5
A
474 479anti-parallel
Strand 6
A
458 462anti-parallel
Strand 7
A
450 454anti-parallel
Strand 8
A
336 341anti-parallel
Strand 9
A
371 376parallel
Strand 10
A
426 430parallel
Strand 11
A
505 506anti-parallel
Strand 12
A
511 512anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
202 208anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
173 176anti-parallel
Strand 5
A
84 90anti-parallel
Strand 6
A
116 123parallel
Strand 7
A
152 159parallel
Strand 8
A
236 240anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il