Analysis of interatomic Contacts of Structural Units in PDB entry:
1V14


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V14 entry

There are 12 chains in PDB entry 1V14 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 2GLY 133
B
MET 1ARG 132
C
GLU 2GLY 133
D
LYS 4GLY 133
E
G 3 C 8
F
G 9 C 16
G
G 3 C 8
H
G 9 C 16
I
G 3 C 8
J
G 9 C 16
K
G 3 C 8
L
G 9 C 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1V14. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
35 43Right-handed alpha
Helix 2
2
A
49 64Right-handed alpha
Helix 3
3
A
64 69Right-handed alpha
Helix 4
4
A
74 81Right-handed alpha
Helix 5
5
A
88 92Right-handed 310
Helix 6
6
A
106 110Right-handed 310
Helix 7
7
A
123 131Right-handed alpha
Helix 8
8
B
20 27Right-handed 310
Helix 9
9
B
35 41Right-handed alpha
Helix 10
10
B
49 63Right-handed alpha
Helix 11
11
B
64 69Right-handed alpha
Helix 12
12
B
72 80Right-handed alpha
Helix 13
13
B
88 92Right-handed 310
Helix 14
14
B
106 110Right-handed 310
Helix 15
15
B
123 132Right-handed alpha
Helix 16
16
C
21 28Right-handed 310
Helix 17
17
C
35 43Right-handed alpha
Helix 18
18
C
49 63Right-handed alpha
Helix 19
19
C
64 69Right-handed alpha
Helix 20
20
C
72 81Right-handed alpha
Helix 21
21
C
88 92Right-handed 310
Helix 22
22
C
123 133Right-handed alpha
Helix 23
23
D
21 28Right-handed 310
Helix 24
24
D
35 43Right-handed alpha
Helix 25
25
D
49 63Right-handed alpha
Helix 26
26
D
64 69Right-handed alpha
Helix 27
27
D
72 81Right-handed alpha
Helix 28
28
D
88 92Right-handed 310
Helix 29
29
D
106 110Right-handed 310
Helix 30
30
D
123 133Right-handed alpha
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There are 8 sheets in PDB entry 1V14. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 10first strand
Strand 2
A
46 47anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
100 103first strand
Strand 2
A
119 122anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
9 10first strand
Strand 2
B
46 47anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
32 33first strand
Strand 2
B
119 122anti-parallel
Strand 3
B
100 103anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
9 10first strand
Strand 2
C
46 47anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
100 103first strand
Strand 2
C
119 122anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
9 10first strand
Strand 2
D
46 47anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
100 103first strand
Strand 2
D
119 122anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il