Analysis of interatomic Contacts of Structural Units in PDB entry:
1V1H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V1H entry

There are 6 chains in PDB entry 1V1H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 319LEU 483
B
VAL 319LEU 483
C
VAL 319LEU 483
D
VAL 319LEU 483
E
VAL 319LEU 483
F
VAL 319LEU 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1V1H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
322 325Right-handed 310
Helix 2
2
A
480 483Right-handed 310
Helix 3
3
B
322 325Right-handed 310
Helix 4
4
B
480 483Right-handed 310
Helix 5
5
C
322 325Right-handed 310
Helix 6
6
C
480 483Right-handed 310
Helix 7
7
D
322 325Right-handed 310
Helix 8
8
D
480 482Right-handed 310
Helix 9
9
E
322 325Right-handed 310
Helix 10
10
E
480 483Right-handed 310
Helix 11
11
F
322 325Right-handed 310
Helix 12
12
F
480 483Right-handed 310
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There are 28 sheets in PDB entry 1V1H. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD, DE, DF, EA, EB, EC, ED, FA, FB, FC, FD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
327 330first strand
Strand 2
A
333 336anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
342 344first strand
Strand 2
A
357 359anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
365 367first strand
Strand 2
A
373 375anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
382 383first strand
Strand 2
A
389 390anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
475 478first strand
Strand 2
A
468 472anti-parallel
Strand 3
B
468 472anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
475 478first strand
Strand 2
A
468 472anti-parallel
Strand 3
C
468 472parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
327 330first strand
Strand 2
B
333 336anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
342 344first strand
Strand 2
B
357 359anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
365 367first strand
Strand 2
B
373 375anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
382 383first strand
Strand 2
B
389 390anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
327 330first strand
Strand 2
C
333 336anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
342 344first strand
Strand 2
C
357 359anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
365 367first strand
Strand 2
C
373 375anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
381 383first strand
Strand 2
C
389 391anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
327 330first strand
Strand 2
D
333 336anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
342 344first strand
Strand 2
D
357 359anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
365 367first strand
Strand 2
D
373 375anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
382 383first strand
Strand 2
D
389 390anti-parallel
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There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
475 478first strand
Strand 2
D
469 472anti-parallel
Strand 3
E
468 472anti-parallel
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There are 3 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
475 478first strand
Strand 2
D
469 472anti-parallel
Strand 3
F
468 472parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
327 330first strand
Strand 2
E
333 336anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
342 344first strand
Strand 2
E
357 359anti-parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
365 367first strand
Strand 2
E
373 375anti-parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
382 383first strand
Strand 2
E
389 390anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
327 330first strand
Strand 2
F
333 336anti-parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
342 344first strand
Strand 2
F
357 359anti-parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
365 367first strand
Strand 2
F
373 375anti-parallel
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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
381 383first strand
Strand 2
F
389 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il