Analysis of interatomic Contacts of Structural Units in PDB entry:
1V40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V40 entry

There are 4 chains in PDB entry 1V40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 2LEU 199
B
PRO 202LEU 399
C
PRO 402LEU 599
D
PRO 602LEU 799
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1V40. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 25Right-handed alpha
Helix 2
2
A
38 44Right-handed alpha
Helix 3
3
A
63 73Right-handed alpha
Helix 4
4
A
81 102Right-handed alpha
Helix 5
5
A
108 122Right-handed alpha
Helix 6
6
A
122 136Right-handed alpha
Helix 7
7
A
147 164Right-handed alpha
Helix 8
8
A
171 184Right-handed alpha
Helix 9
9
A
184 194Right-handed alpha
Helix 10
10
B
215 226Right-handed alpha
Helix 11
11
B
238 244Right-handed alpha
Helix 12
12
B
263 273Right-handed alpha
Helix 13
13
B
281 300Right-handed alpha
Helix 14
14
B
308 322Right-handed alpha
Helix 15
15
B
322 336Right-handed alpha
Helix 16
16
B
347 364Right-handed alpha
Helix 17
17
B
371 383Right-handed alpha
Helix 18
18
B
384 394Right-handed alpha
Helix 19
19
C
415 426Right-handed alpha
Helix 20
20
C
435 437Right-handed 310
Helix 21
21
C
438 444Right-handed alpha
Helix 22
22
C
463 473Right-handed alpha
Helix 23
23
C
481 500Right-handed alpha
Helix 24
24
C
508 523Right-handed alpha
Helix 25
25
C
523 536Right-handed alpha
Helix 26
26
C
547 564Right-handed alpha
Helix 27
27
C
571 584Right-handed alpha
Helix 28
28
C
584 594Right-handed alpha
Helix 29
29
D
612 614Right-handed 310
Helix 30
30
D
615 626Right-handed alpha
Helix 31
31
D
635 637Right-handed 310
Helix 32
32
D
638 644Right-handed alpha
Helix 33
33
D
663 673Right-handed alpha
Helix 34
34
D
681 700Right-handed alpha
Helix 35
35
D
708 723Right-handed alpha
Helix 36
36
D
723 736Right-handed alpha
Helix 37
37
D
747 764Right-handed alpha
Helix 38
38
D
771 784Right-handed alpha
Helix 39
39
D
784 794Right-handed alpha
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There are 4 sheets in PDB entry 1V40. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
30 34first strand
Strand 2
A
4 9parallel
Strand 3
A
53 56anti-parallel
Strand 4
A
59 62anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
230 234first strand
Strand 2
B
204 209parallel
Strand 3
B
253 256anti-parallel
Strand 4
B
259 262anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
430 434first strand
Strand 2
C
404 409parallel
Strand 3
C
453 456anti-parallel
Strand 4
C
459 462anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
630 634first strand
Strand 2
D
604 609parallel
Strand 3
D
653 656anti-parallel
Strand 4
D
659 662anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il