Analysis of interatomic Contacts of Structural Units in PDB entry:
1V5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V5E entry

There is 1 chain in PDB entry 1V5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LYS 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1V5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 19Right-handed alpha
Helix 2
2
A
32 37Right-handed alpha
Helix 3
3
A
53 67Right-handed alpha
Helix 4
4
A
79 84Right-handed alpha
Helix 5
5
A
85 96Right-handed alpha
Helix 6
6
A
107 111Right-handed 310
Helix 7
7
A
122 127Right-handed alpha
Helix 8
8
A
137 139Right-handed 310
Helix 9
9
A
140 155Right-handed alpha
Helix 10
10
A
166 169Right-handed 310
Helix 11
11
A
175 177Right-handed 310
Helix 12
12
A
180 184Right-handed 310
Helix 13
13
A
193 207Right-handed alpha
Helix 14
14
A
216 219Right-handed 310
Helix 15
15
A
221 233Right-handed alpha
Helix 16
16
A
242 246Right-handed 310
Helix 17
17
A
262 272Right-handed alpha
Helix 18
18
A
303 307Right-handed 310
Helix 19
19
A
320 332Right-handed alpha
Helix 20
20
A
338 360Right-handed alpha
Helix 21
21
A
367 379Right-handed alpha
Helix 22
22
A
390 395Right-handed alpha
Helix 23
23
A
396 399Right-handed 310
Helix 24
24
A
419 431Right-handed alpha
Helix 25
25
A
442 449Right-handed alpha
Helix 26
26
A
451 458Right-handed alpha
Helix 27
27
A
474 478Right-handed 310
Helix 28
28
A
495 503Right-handed alpha
Helix 29
29
A
512 529Right-handed alpha
Helix 30
30
A
558 569Right-handed alpha
Helix 31
31
A
576 584Right-handed alpha
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There are 4 sheets in PDB entry 1V5E. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
171 173anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
23 26parallel
Strand 3
A
73 76parallel
Strand 4
A
99 105parallel
Strand 5
A
158 164parallel
Strand 6
A
131 134parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
236 238parallel
Strand 3
A
210 214parallel
Strand 4
A
274 278parallel
Strand 5
A
296 301parallel
Strand 6
A
315 318parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 409first strand
Strand 2
A
384 387parallel
Strand 3
A
436 441parallel
Strand 4
A
463 468parallel
Strand 5
A
533 538parallel
Strand 6
A
506 510parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il