Analysis of interatomic Contacts of Structural Units in PDB entry:
1V5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V5W entry

There are 2 chains in PDB entry 1V5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 83GLU 340
B
 PRO 83GLU 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1V5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
88 95Right-handed alpha
Helix 2
2
A
96 98Right-handed 310
Helix 3
3
A
105 112Right-handed alpha
Helix 4
4
A
131 143Right-handed alpha
Helix 5
5
A
166 177Right-handed alpha
Helix 6
6
A
180 187Right-handed alpha
Helix 7
7
A
197 213Right-handed alpha
Helix 8
8
A
225 227Right-handed 310
Helix 9
9
A
228 233Right-handed alpha
Helix 10
10
A
234 237Right-handed 310
Helix 11
11
A
238 261Right-handed alpha
Helix 12
12
B
87 95Right-handed alpha
Helix 13
13
B
96 98Right-handed 310
Helix 14
14
B
105 112Right-handed alpha
Helix 15
15
B
131 143Right-handed alpha
Helix 16
16
B
166 177Right-handed alpha
Helix 17
17
B
180 187Right-handed alpha
Helix 18
18
B
197 213Right-handed alpha
Helix 19
19
B
225 227Right-handed 310
Helix 20
20
B
228 233Right-handed alpha
Helix 21
21
B
234 237Right-handed 310
Helix 22
22
B
238 261Right-handed alpha
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There are 2 sheets in PDB entry 1V5W. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
B
189 192anti-parallel
Strand 3
B
155 160parallel
Strand 4
B
217 223parallel
Strand 5
B
263 268parallel
Strand 6
B
121 125parallel
Strand 7
B
299 305parallel
Strand 8
B
310 317anti-parallel
Strand 9
B
326 331anti-parallel
Strand 10
B
334 337anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
155 160parallel
Strand 3
A
217 223parallel
Strand 4
A
263 268parallel
Strand 5
A
121 125parallel
Strand 6
A
299 305parallel
Strand 7
A
310 317anti-parallel
Strand 8
A
326 331anti-parallel
Strand 9
A
334 337anti-parallel
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