Analysis of interatomic Contacts of Structural Units in PDB entry:
1V6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V6A entry

There are 2 chains in PDB entry 1V6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 332
B
 ALA 1LEU 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 1V6A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 8Right-handed alpha
Helix 2
2
A
29 42Right-handed alpha
Helix 3
3
A
54 67Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
82 87Right-handed 310
Helix 6
6
A
105 128Right-handed alpha
Helix 7
7
A
139 152Right-handed alpha
Helix 8
8
A
154 156Right-handed 310
Helix 9
9
A
163 179Right-handed alpha
Helix 10
10
A
181 183Right-handed 310
Helix 11
11
A
201 203Right-handed 310
Helix 12
12
A
211 215Right-handed alpha
Helix 13
13
A
227 236Right-handed alpha
Helix 14
14
A
236 246Right-handed alpha
Helix 15
15
A
249 265Right-handed alpha
Helix 16
16
A
309 328Right-handed alpha
Helix 17
17
B
2 8Right-handed alpha
Helix 18
18
B
29 42Right-handed alpha
Helix 19
19
B
54 67Right-handed alpha
Helix 20
20
B
68 72Right-handed 310
Helix 21
21
B
82 87Right-handed 310
Helix 22
22
B
105 128Right-handed alpha
Helix 23
23
B
139 152Right-handed alpha
Helix 24
24
B
154 156Right-handed 310
Helix 25
25
B
163 179Right-handed alpha
Helix 26
26
B
181 183Right-handed 310
Helix 27
27
B
201 203Right-handed 310
Helix 28
28
B
211 215Right-handed alpha
Helix 29
29
B
227 246Right-handed alpha
Helix 30
30
B
249 265Right-handed alpha
Helix 31
31
B
309 328Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1V6A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
47 51parallel
Strand 3
A
23 26parallel
Strand 4
A
91 94parallel
Strand 5
A
132 135parallel
Strand 6
A
158 160parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
205 206anti-parallel
Strand 3
A
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
197 199anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 276first strand
Strand 2
A
288 296anti-parallel
Strand 3
A
299 303anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 79first strand
Strand 2
B
47 51parallel
Strand 3
B
23 26parallel
Strand 4
B
91 94parallel
Strand 5
B
132 135parallel
Strand 6
B
158 160parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
205 206anti-parallel
Strand 3
B
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
198 199anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 276first strand
Strand 2
B
288 296anti-parallel
Strand 3
B
299 303anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il