Analysis of interatomic Contacts of Structural Units in PDB entry:
1V9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V9U entry

There are 5 chains in PDB entry 1V9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 LEU 15ALA 283
2
 ARG 12GLN 261
3
 GLY 1GLN 237
4
 ALA 2LEU 43
5
 CYS 113ASN 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1V9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
36 40Right-handed 310
Helix 2
2
1
46 51Right-handed alpha
Helix 3
3
1
62 65Right-handed 310
Helix 4
4
1
66 71Right-handed alpha
Helix 5
5
1
105 112Right-handed alpha
Helix 6
6
1
158 163Right-handed 310
Helix 7
7
1
206 210Right-handed 310
Helix 8
8
2
35 37Right-handed 310
Helix 9
9
2
56 60Right-handed 310
Helix 10
10
2
89 98Right-handed alpha
Helix 11
11
2
143 148Right-handed 310
Helix 12
12
2
171 175Right-handed 310
Helix 13
13
2
183 187Right-handed 310
Helix 14
14
3
43 48Right-handed alpha
Helix 15
15
3
64 67Right-handed 310
Helix 16
16
3
93 96Right-handed 310
Helix 17
17
3
97 104Right-handed alpha
Helix 18
18
3
143 149Right-handed alpha
Helix 19
19
5
129 133Right-handed 310
Helix 20
20
5
143 147Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 1V9U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
75 83first strand
Strand 2
1
229 247anti-parallel
Strand 3
1
114 131anti-parallel
Strand 4
1
191 192anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
179 182first strand
Strand 2
1
114 131anti-parallel
Strand 3
1
229 247anti-parallel
Strand 4
3
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
94 95first strand
Strand 2
1
215 219anti-parallel
Strand 3
1
140 146anti-parallel
Strand 4
1
167 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
15 18first strand
Strand 2
2
21 24anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
199 204parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
239 256anti-parallel
Strand 5
2
69 72anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
64 65first strand
Strand 2
2
239 256anti-parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
213 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
154 155first strand
Strand 2
2
78 80anti-parallel
Strand 3
2
223 229anti-parallel
Strand 4
2
121 126anti-parallel
Strand 5
2
189 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
51 52first strand
Strand 2
3
205 214anti-parallel
Strand 3
3
69 73anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
51 52first strand
Strand 2
3
205 214anti-parallel
Strand 3
3
113 119anti-parallel
Strand 4
3
164 167anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
81 83first strand
Strand 2
3
187 192anti-parallel
Strand 3
3
129 134anti-parallel
Strand 4
3
151 153anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
176 177first strand
Strand 2
3
106 110anti-parallel
Strand 3
3
219 223anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
3 4first strand
Strand 2
4
26 27anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il