Analysis of interatomic Contacts of Structural Units in PDB entry:
1VCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VCI entry

There is 1 chain in PDB entry 1VCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7VAL 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1VCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 60Right-handed alpha
Helix 2
2
A
80 84Right-handed 310
Helix 3
3
A
100 107Right-handed alpha
Helix 4
4
A
115 130Right-handed alpha
Helix 5
5
A
132 136Right-handed 310
Helix 6
6
A
139 143Right-handed 310
Helix 7
7
A
147 158Right-handed alpha
Helix 8
8
A
174 193Right-handed alpha
Helix 9
9
A
202 210Right-handed alpha
Helix 10
10
A
226 233Right-handed alpha
Helix 11
11
A
236 243Right-handed alpha
Helix 12
12
A
277 281Right-handed 310
Helix 13
13
A
290 292Right-handed 310
Helix 14
14
A
359 361Right-handed 310
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There are 4 sheets in PDB entry 1VCI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 35first strand
Strand 2
A
13 22anti-parallel
Strand 3
A
66 71anti-parallel
Strand 4
A
74 75anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
163 167parallel
Strand 3
A
195 200parallel
Strand 4
A
40 44parallel
Strand 5
A
212 217parallel
Strand 6
A
220 225anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
259 262anti-parallel
Strand 3
A
249 255anti-parallel
Strand 4
A
284 289anti-parallel
Strand 5
A
362 365anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
351 357anti-parallel
Strand 3
A
308 320anti-parallel
Strand 4
A
324 331anti-parallel
Strand 5
A
334 341anti-parallel
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