Analysis of interatomic Contacts of Structural Units in PDB entry:
1VCO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VCO entry

There is 1 chain in PDB entry 1VCO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 10GLU 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1VCO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 40Right-handed alpha
Helix 2
2
A
57 61Right-handed 310
Helix 3
3
A
80 90Right-handed alpha
Helix 4
4
A
94 96Right-handed 310
Helix 5
5
A
101 114Right-handed alpha
Helix 6
6
A
126 143Right-handed alpha
Helix 7
7
A
161 170Right-handed alpha
Helix 8
8
A
170 176Right-handed alpha
Helix 9
9
A
199 212Right-handed alpha
Helix 10
10
A
228 240Right-handed alpha
Helix 11
11
A
242 244Right-handed 310
Helix 12
12
A
256 266Right-handed alpha
Helix 13
13
A
266 275Right-handed alpha
Helix 14
14
A
284 296Right-handed alpha
Helix 15
15
A
316 330Right-handed alpha
Helix 16
16
A
342 344Right-handed 310
Helix 17
17
A
348 353Right-handed alpha
Helix 18
18
A
369 383Right-handed alpha
Helix 19
19
A
391 405Right-handed alpha
Helix 20
20
A
429 433Right-handed 310
Helix 21
21
A
454 461Right-handed alpha
Helix 22
22
A
476 487Right-handed alpha
Helix 23
23
A
522 527Right-handed 310
Helix 24
24
A
533 547Right-handed alpha
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There are 5 sheets in PDB entry 1VCO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
45 51parallel
Strand 3
A
147 152parallel
Strand 4
A
13 19parallel
Strand 5
A
180 187parallel
Strand 6
A
218 223parallel
Strand 7
A
246 250parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
77 78anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
196 197anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 340first strand
Strand 2
A
299 307parallel
Strand 3
A
359 361parallel
Strand 4
A
387 390parallel
Strand 5
A
516 519parallel
Strand 6
A
505 510anti-parallel
Strand 7
A
488 493anti-parallel
Strand 8
A
442 450anti-parallel
Strand 9
A
464 471anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
423 427parallel
Strand 3
A
473 475anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il