Analysis of interatomic Contacts of Structural Units in PDB entry:
1VE3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VE3 entry

There are 2 chains in PDB entry 1VE3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 2LYS 227
B
GLY 2LYS 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1VE3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
3 10Right-handed alpha
Helix 2
2
A
18 35Right-handed alpha
Helix 3
3
A
50 59Right-handed alpha
Helix 4
4
A
69 83Right-handed alpha
Helix 5
5
A
112 116Right-handed 310
Helix 6
6
A
117 131Right-handed alpha
Helix 7
7
A
144 149Right-handed alpha
Helix 8
8
A
150 152Right-handed 310
Helix 9
9
A
195 204Right-handed alpha
Helix 10
10
B
3 10Right-handed alpha
Helix 11
11
B
11 14Right-handed 310
Helix 12
12
B
18 35Right-handed alpha
Helix 13
13
B
50 59Right-handed alpha
Helix 14
14
B
69 84Right-handed alpha
Helix 15
15
B
112 116Right-handed 310
Helix 16
16
B
117 131Right-handed alpha
Helix 17
17
B
144 160Right-handed alpha
Helix 18
18
B
195 207Right-handed alpha
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There are 4 sheets in PDB entry 1VE3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
88 91first strand
Strand 2
A
62 67parallel
Strand 3
A
41 45parallel
Strand 4
A
104 110parallel
Strand 5
A
132 143parallel
Strand 6
A
219 226anti-parallel
Strand 7
A
207 215anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
166 170first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
188 192anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
88 91first strand
Strand 2
B
62 67parallel
Strand 3
B
41 45parallel
Strand 4
B
104 110parallel
Strand 5
B
132 142parallel
Strand 6
B
219 225anti-parallel
Strand 7
B
208 215anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
162 170first strand
Strand 2
B
175 182anti-parallel
Strand 3
B
186 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il