Analysis of interatomic Contacts of Structural Units in PDB entry:
1VF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VF5 entry

There are 16 chains in PDB entry 1VF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 13PRO 214
B
LEU 18LEU 155
C
TYR 1GLU 286
D
ASP 12VAL 179
E
MET 1ILE 32
F
MET 1GLU 33
G
LEU 9ARG 31
H
ILE 3LEU 29
N
GLU 13PRO 214
O
LEU 18LEU 155
P
TYR 1GLU 286
Q
ASP 12VAL 179
R
MET 1ILE 32
S
MET 1GLU 35
T
LEU 9LEU 35
U
ILE 3LEU 29
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 1VF5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
32 56Right-handed alpha
Helix 2
2
A
64 76Right-handed alpha
Helix 3
3
A
78 107Right-handed alpha
Helix 4
4
A
115 137Right-handed alpha
Helix 5
5
A
141 157Right-handed alpha
Helix 6
6
A
160 171Right-handed alpha
Helix 7
7
A
177 205Right-handed alpha
Helix 8
8
B
32 53Right-handed alpha
Helix 9
9
B
81 89Right-handed alpha
Helix 10
10
B
95 115Right-handed alpha
Helix 11
11
B
126 144Right-handed alpha
Helix 12
12
C
1 9Right-handed alpha
Helix 13
13
C
20 25Right-handed alpha
Helix 14
14
C
92 97Right-handed alpha
Helix 15
15
C
251 280Right-handed alpha
Helix 16
16
D
18 43Right-handed alpha
Helix 17
17
D
65 72Right-handed alpha
Helix 18
18
E
1 29Right-handed alpha
Helix 19
19
F
1 30Right-handed alpha
Helix 20
20
G
9 31Right-handed alpha
Helix 21
21
H
3 29Right-handed alpha
Helix 22
22
N
32 56Right-handed alpha
Helix 23
23
N
64 76Right-handed alpha
Helix 24
24
N
78 107Right-handed alpha
Helix 25
25
N
114 137Right-handed alpha
Helix 26
26
N
142 157Right-handed alpha
Helix 27
27
N
161 170Right-handed alpha
Helix 28
28
N
178 205Right-handed alpha
Helix 29
29
O
32 53Right-handed alpha
Helix 30
30
O
81 89Right-handed alpha
Helix 31
31
O
95 115Right-handed alpha
Helix 32
32
O
126 144Right-handed alpha
Helix 33
33
P
1 9Right-handed alpha
Helix 34
34
P
20 25Right-handed alpha
Helix 35
35
P
92 97Right-handed alpha
Helix 36
36
P
251 280Right-handed alpha
Helix 37
37
Q
18 43Right-handed alpha
Helix 38
38
Q
65 71Right-handed alpha
Helix 39
39
R
1 29Right-handed alpha
Helix 40
40
S
2 29Right-handed alpha
Helix 41
41
T
9 35Right-handed alpha
Helix 42
42
U
3 29Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 1VF5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
28 37first strand
Strand 2
C
47 55anti-parallel
Strand 3
C
126 133anti-parallel
Strand 4
C
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
58 62first strand
Strand 2
C
66 69anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
104 106first strand
Strand 2
C
112 118anti-parallel
Strand 3
C
71 78anti-parallel
Strand 4
C
145 156anti-parallel
Strand 5
C
237 248anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
159 161first strand
Strand 2
C
165 168anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
182 186first strand
Strand 2
C
192 200anti-parallel
Strand 3
C
207 212anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
55 58first strand
Strand 2
D
75 83anti-parallel
Strand 3
D
86 93anti-parallel
Strand 4
D
101 105anti-parallel
Strand 5
D
148 155anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
106 108first strand
Strand 2
D
113 117anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
122 125first strand
Strand 2
D
130 133anti-parallel
Strand 3
D
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
28 37first strand
Strand 2
P
47 55anti-parallel
Strand 3
P
126 133anti-parallel
Strand 4
P
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
58 62first strand
Strand 2
P
66 69anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
104 106first strand
Strand 2
P
112 118anti-parallel
Strand 3
P
71 78anti-parallel
Strand 4
P
145 156anti-parallel
Strand 5
P
237 248anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
159 161first strand
Strand 2
P
165 168anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
182 186first strand
Strand 2
P
192 200anti-parallel
Strand 3
P
207 212anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
55 58first strand
Strand 2
Q
75 83anti-parallel
Strand 3
Q
86 93anti-parallel
Strand 4
Q
101 105anti-parallel
Strand 5
Q
148 155anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
106 108first strand
Strand 2
Q
113 117anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
122 125first strand
Strand 2
Q
130 133anti-parallel
Strand 3
Q
137 140anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il