Analysis of interatomic Contacts of Structural Units in PDB entry:
1VL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VL5 entry

There are 4 chains in PDB entry 1VL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 28THR 258
B
 GLY 28THR 258
C
 GLY 28THR 258
D
 GLY 28THR 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1VL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 39Right-handed alpha
Helix 2
2
A
54 61Right-handed alpha
Helix 3
3
A
62 64Right-handed 310
Helix 4
4
A
73 87Right-handed alpha
Helix 5
5
A
117 121Right-handed 310
Helix 6
6
A
123 134Right-handed alpha
Helix 7
7
A
151 166Right-handed alpha
Helix 8
8
A
174 186Right-handed alpha
Helix 9
9
A
201 208Right-handed alpha
Helix 10
10
A
211 224Right-handed alpha
Helix 11
11
A
226 233Right-handed alpha
Helix 12
12
B
30 39Right-handed alpha
Helix 13
13
B
54 61Right-handed alpha
Helix 14
14
B
62 64Right-handed 310
Helix 15
15
B
73 87Right-handed alpha
Helix 16
16
B
117 121Right-handed 310
Helix 17
17
B
123 134Right-handed alpha
Helix 18
18
B
151 166Right-handed alpha
Helix 19
19
B
174 186Right-handed alpha
Helix 20
20
B
201 207Right-handed alpha
Helix 21
21
B
211 224Right-handed alpha
Helix 22
22
B
226 234Right-handed alpha
Helix 23
23
C
30 39Right-handed alpha
Helix 24
24
C
56 61Right-handed alpha
Helix 25
25
C
62 64Right-handed 310
Helix 26
26
C
117 121Right-handed 310
Helix 27
27
C
123 134Right-handed alpha
Helix 28
28
C
151 166Right-handed alpha
Helix 29
29
C
174 186Right-handed alpha
Helix 30
30
C
201 208Right-handed alpha
Helix 31
31
C
211 224Right-handed alpha
Helix 32
32
C
226 234Right-handed alpha
Helix 33
33
D
30 39Right-handed alpha
Helix 34
34
D
54 61Right-handed alpha
Helix 35
35
D
73 87Right-handed alpha
Helix 36
36
D
117 121Right-handed 310
Helix 37
37
D
123 134Right-handed alpha
Helix 38
38
D
151 166Right-handed alpha
Helix 39
39
D
174 186Right-handed alpha
Helix 40
40
D
201 208Right-handed alpha
Helix 41
41
D
211 224Right-handed alpha
Helix 42
42
D
226 234Right-handed alpha
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There are 6 sheets in PDB entry 1VL5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
66 71parallel
Strand 3
A
45 49parallel
Strand 4
A
109 115parallel
Strand 5
A
135 147parallel
Strand 6
A
241 255anti-parallel
Strand 7
A
188 200anti-parallel
Strand 8
C
188 200anti-parallel
Strand 9
C
241 255anti-parallel
Strand 10
C
135 147anti-parallel
Strand 11
C
109 115parallel
Strand 12
C
45 50parallel
Strand 13
C
66 71parallel
Strand 14
C
93 96parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
241 255anti-parallel
Strand 3
A
188 200anti-parallel
Strand 4
C
188 200anti-parallel
Strand 5
C
241 255anti-parallel
Strand 6
C
236 238anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 96first strand
Strand 2
B
66 71parallel
Strand 3
B
45 49parallel
Strand 4
B
109 115parallel
Strand 5
B
135 147parallel
Strand 6
B
241 255anti-parallel
Strand 7
B
188 200anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 96first strand
Strand 2
B
66 71parallel
Strand 3
B
45 49parallel
Strand 4
B
109 115parallel
Strand 5
B
135 147parallel
Strand 6
B
241 255anti-parallel
Strand 7
B
236 238anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 96first strand
Strand 2
D
66 71parallel
Strand 3
D
45 49parallel
Strand 4
D
109 115parallel
Strand 5
D
135 147parallel
Strand 6
D
241 255anti-parallel
Strand 7
D
188 200anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 96first strand
Strand 2
D
66 71parallel
Strand 3
D
45 49parallel
Strand 4
D
109 115parallel
Strand 5
D
135 147parallel
Strand 6
D
241 255anti-parallel
Strand 7
D
236 238anti-parallel
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