Analysis of interatomic Contacts of Structural Units in PDB entry:
1VPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VPP entry

There are 4 chains in PDB entry 1VPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
V
GLU 13LYS 108
W
GLU 13LYS 108
X
ARG 1GLN 20
Y
ARG 1GLU 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1VPP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
V
17 24Right-handed alpha
Helix 2
2
V
35 38Right-handed alpha
Helix 3
3
W
17 24Right-handed alpha
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There are 6 sheets in PDB entry 1VPP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
27 34first strand
Strand 2
V
51 58anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
46 48first strand
Strand 2
V
73 83anti-parallel
Strand 3
V
89 99anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
66 72first strand
Strand 2
V
101 106anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
27 34first strand
Strand 2
W
51 58anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
46 48first strand
Strand 2
W
73 84anti-parallel
Strand 3
W
88 99anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
66 72first strand
Strand 2
W
101 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il