Analysis of interatomic Contacts of Structural Units in PDB entry:
1VQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VQ1 entry

There are 2 chains in PDB entry 1VQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 12SER 282
B
 ARG 12SER 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1VQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
31 45Right-handed alpha
Helix 3
3
A
47 51Right-handed 310
Helix 4
4
A
59 76Right-handed alpha
Helix 5
5
A
78 84Right-handed alpha
Helix 6
6
A
104 121Right-handed alpha
Helix 7
7
A
135 142Right-handed alpha
Helix 8
8
A
153 166Right-handed alpha
Helix 9
9
A
181 188Right-handed 310
Helix 10
10
A
215 220Right-handed alpha
Helix 11
11
A
226 236Right-handed alpha
Helix 12
12
A
248 250Right-handed 310
Helix 13
13
A
251 259Right-handed alpha
Helix 14
14
B
13 25Right-handed alpha
Helix 15
15
B
31 45Right-handed alpha
Helix 16
16
B
47 51Right-handed 310
Helix 17
17
B
59 76Right-handed alpha
Helix 18
18
B
78 84Right-handed alpha
Helix 19
19
B
104 121Right-handed alpha
Helix 20
20
B
133 142Right-handed alpha
Helix 21
21
B
153 166Right-handed alpha
Helix 22
22
B
181 188Right-handed 310
Helix 23
23
B
215 220Right-handed alpha
Helix 24
24
B
226 236Right-handed alpha
Helix 25
25
B
248 250Right-handed 310
Helix 26
26
B
251 259Right-handed alpha
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There are 4 sheets in PDB entry 1VQ1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
91 93anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
146 151parallel
Strand 3
A
124 128parallel
Strand 4
A
193 196parallel
Strand 5
A
242 246parallel
Strand 6
A
272 278anti-parallel
Strand 7
A
263 266anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
91 93anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 177first strand
Strand 2
B
146 151parallel
Strand 3
B
124 128parallel
Strand 4
B
193 196parallel
Strand 5
B
242 246parallel
Strand 6
B
272 278anti-parallel
Strand 7
B
263 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il