Analysis of interatomic Contacts of Structural Units in PDB entry:
1VRX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VRX entry

There are 2 chains in PDB entry 1VRX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 358
B
 ALA 1VAL 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 1VRX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 56Right-handed alpha
Helix 2
2
A
68 71Right-handed 310
Helix 3
3
A
92 107Right-handed alpha
Helix 4
4
A
133 148Right-handed alpha
Helix 5
5
A
177 191Right-handed alpha
Helix 6
6
A
217 221Right-handed 310
Helix 7
7
A
247 251Right-handed 310
Helix 8
8
A
258 267Right-handed alpha
Helix 9
9
A
267 273Right-handed alpha
Helix 10
10
A
289 303Right-handed alpha
Helix 11
11
A
305 310Right-handed alpha
Helix 12
12
A
340 348Right-handed alpha
Helix 13
13
A
349 351Right-handed 310
Helix 14
14
B
45 56Right-handed alpha
Helix 15
15
B
68 71Right-handed 310
Helix 16
16
B
85 89Right-handed 310
Helix 17
17
B
92 107Right-handed alpha
Helix 18
18
B
133 149Right-handed alpha
Helix 19
19
B
177 193Right-handed alpha
Helix 20
20
B
247 251Right-handed 310
Helix 21
21
B
258 267Right-handed alpha
Helix 22
22
B
268 273Right-handed alpha
Helix 23
23
B
289 304Right-handed alpha
Helix 24
24
B
305 310Right-handed alpha
Helix 25
25
B
340 348Right-handed alpha
Helix 26
26
B
349 351Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1VRX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
12 14anti-parallel
Strand 3
A
20 21anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
60 66parallel
Strand 3
A
24 27parallel
Strand 4
A
315 318parallel
Strand 5
A
278 282parallel
Strand 6
A
233 238parallel
Strand 7
A
197 201parallel
Strand 8
A
154 158parallel
Strand 9
A
110 117parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
12 14anti-parallel
Strand 3
B
20 21anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
60 66parallel
Strand 3
B
24 27parallel
Strand 4
B
315 318parallel
Strand 5
B
278 282parallel
Strand 6
B
233 238parallel
Strand 7
B
197 201parallel
Strand 8
B
154 158parallel
Strand 9
B
110 117parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 206first strand
Strand 2
B
209 210anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il