Analysis of interatomic Contacts of Structural Units in PDB entry:
1VZX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VZX entry

There are 2 chains in PDB entry 1VZX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 82VAL 368
B
 LYS 1082VAL 1368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1VZX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 89Right-handed alpha
Helix 2
2
A
90 94Right-handed 310
Helix 3
3
A
114 125Right-handed alpha
Helix 4
4
A
138 155Right-handed alpha
Helix 5
5
A
169 173Right-handed 310
Helix 6
6
A
194 213Right-handed alpha
Helix 7
7
A
213 218Right-handed alpha
Helix 8
8
A
235 239Right-handed 310
Helix 9
9
A
254 258Right-handed 310
Helix 10
10
A
287 308Right-handed alpha
Helix 11
11
A
315 327Right-handed alpha
Helix 12
12
A
335 338Right-handed 310
Helix 13
13
A
340 344Right-handed 310
Helix 14
14
A
360 365Right-handed alpha
Helix 15
15
B
1084 1089Right-handed alpha
Helix 16
16
B
1090 1094Right-handed 310
Helix 17
17
B
1114 1126Right-handed alpha
Helix 18
18
B
1138 1155Right-handed alpha
Helix 19
19
B
1169 1173Right-handed 310
Helix 20
20
B
1194 1213Right-handed alpha
Helix 21
21
B
1213 1218Right-handed alpha
Helix 22
22
B
1235 1239Right-handed 310
Helix 23
23
B
1254 1258Right-handed 310
Helix 24
24
B
1287 1308Right-handed alpha
Helix 25
25
B
1314 1327Right-handed alpha
Helix 26
26
B
1335 1338Right-handed 310
Helix 27
27
B
1340 1344Right-handed 310
Helix 28
28
B
1360 1365Right-handed alpha
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There are 4 sheets in PDB entry 1VZX. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
331 333parallel
Strand 3
A
242 246parallel
Strand 4
A
279 286anti-parallel
Strand 5
A
220 224anti-parallel
Strand 6
A
129 135parallel
Strand 7
A
161 167parallel
Strand 8
A
182 188parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
354 356anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1107 1108first strand
Strand 2
B
1331 1333parallel
Strand 3
B
1242 1246parallel
Strand 4
B
1279 1286anti-parallel
Strand 5
B
1220 1224anti-parallel
Strand 6
B
1129 1135parallel
Strand 7
B
1161 1167parallel
Strand 8
B
1182 1188parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1228 1230first strand
Strand 2
B
1354 1356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il