Analysis of interatomic Contacts of Structural Units in PDB entry:
1W5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W5Q entry

There are 2 chains in PDB entry 1W5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6GLY 336
B
 ALA 6GLY 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1W5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 29Right-handed alpha
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
65 78Right-handed alpha
Helix 4
4
A
90 94Right-handed 310
Helix 5
5
A
98 103Right-handed 310
Helix 6
6
A
106 119Right-handed alpha
Helix 7
7
A
149 167Right-handed alpha
Helix 8
8
A
180 192Right-handed alpha
Helix 9
9
A
208 210Right-handed 310
Helix 10
10
A
211 217Right-handed alpha
Helix 11
11
A
228 232Right-handed 310
Helix 12
12
A
239 252Right-handed alpha
Helix 13
13
A
262 264Right-handed 310
Helix 14
14
A
265 277Right-handed alpha
Helix 15
15
A
285 298Right-handed alpha
Helix 16
16
A
304 317Right-handed alpha
Helix 17
17
A
325 335Right-handed alpha
Helix 18
18
B
21 29Right-handed alpha
Helix 19
19
B
34 36Right-handed 310
Helix 20
20
B
65 79Right-handed alpha
Helix 21
21
B
90 94Right-handed 310
Helix 22
22
B
98 103Right-handed 310
Helix 23
23
B
106 119Right-handed alpha
Helix 24
24
B
149 168Right-handed alpha
Helix 25
25
B
180 193Right-handed alpha
Helix 26
26
B
208 215Right-handed 310
Helix 27
27
B
228 232Right-handed 310
Helix 28
28
B
239 252Right-handed alpha
Helix 29
29
B
262 264Right-handed 310
Helix 30
30
B
265 277Right-handed alpha
Helix 31
31
B
285 298Right-handed alpha
Helix 32
32
B
304 317Right-handed alpha
Helix 33
33
B
325 335Right-handed alpha
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There are 2 sheets in PDB entry 1W5Q. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 45first strand
Strand 2
A
320 323parallel
Strand 3
A
280 284parallel
Strand 4
A
256 260parallel
Strand 5
A
198 205parallel
Strand 6
A
171 174parallel
Strand 7
A
123 128parallel
Strand 8
A
82 87parallel
Strand 9
A
38 45parallel
Strand 10
A
320 323parallel
Strand 11
A
280 284parallel
Strand 12
A
38 45first strand
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There are 12 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 45first strand
Strand 2
B
320 323parallel
Strand 3
B
280 284parallel
Strand 4
B
256 260parallel
Strand 5
B
198 205parallel
Strand 6
B
171 174parallel
Strand 7
B
123 128parallel
Strand 8
B
82 87parallel
Strand 9
B
38 45parallel
Strand 10
B
320 323parallel
Strand 11
B
280 284parallel
Strand 12
B
38 45first strand
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