Analysis of interatomic Contacts of Structural Units in PDB entry:
1W72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W72 entry

There are 10 chains in PDB entry 1W72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 1TRP 274
B
MET 0MET 99
C
GLU 1TYR 9
D
GLY 1TRP 274
E
MET 0MET 99
F
GLU 1TYR 9
H
GLU 1LYS 228
I
GLU 1LYS 228
L
SER 1PRO 211
M
SER 1PRO 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1W72. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
49 55Right-handed 310
Helix 2
2
A
56 85Right-handed alpha
Helix 3
3
A
137 150Right-handed alpha
Helix 4
4
A
151 162Right-handed alpha
Helix 5
5
A
162 175Right-handed alpha
Helix 6
6
A
175 180Right-handed alpha
Helix 7
7
A
253 255Right-handed 310
Helix 8
8
D
49 53Right-handed 310
Helix 9
9
D
56 85Right-handed alpha
Helix 10
10
D
137 150Right-handed alpha
Helix 11
11
D
151 162Right-handed alpha
Helix 12
12
D
162 175Right-handed alpha
Helix 13
13
D
175 180Right-handed alpha
Helix 14
14
D
253 255Right-handed 310
Helix 15
15
H
28 32Right-handed 310
Helix 16
16
H
83 87Right-handed 310
Helix 17
17
H
163 165Right-handed 310
Helix 18
18
H
213 216Right-handed 310
Helix 19
19
I
28 32Right-handed 310
Helix 20
20
I
83 87Right-handed 310
Helix 21
21
I
163 165Right-handed 310
Helix 22
22
I
213 216Right-handed 310
Helix 23
23
L
27 31Right-handed 310
Helix 24
24
L
79 83Right-handed 310
Helix 25
25
L
121 127Right-handed alpha
Helix 26
26
L
182 188Right-handed alpha
Helix 27
27
M
27 31Right-handed 310
Helix 28
28
M
79 83Right-handed 310
Helix 29
29
M
121 127Right-handed alpha
Helix 30
30
M
182 189Right-handed alpha
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There are 29 sheets in PDB entry 1W72. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, A, DB, C, DD, EA, EB, HA, HB, HC, HD, IA, IB, IC, ID, LA, LB, LC, LD, MA, MB, MC, MD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
18 28anti-parallel
Strand 4
A
3 14anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 193first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
228 230anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 193first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
234 235anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
222 223first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
270 273anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
46 47first strand
Strand 2
D
31 37anti-parallel
Strand 3
D
18 28anti-parallel
Strand 4
D
3 14anti-parallel
Strand 5
D
94 103anti-parallel
Strand 6
D
109 118anti-parallel
Strand 7
D
121 126anti-parallel
Strand 8
D
133 135anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
186 193first strand
Strand 2
D
198 208anti-parallel
Strand 3
D
241 250anti-parallel
Strand 4
D
228 230anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
186 193first strand
Strand 2
D
198 208anti-parallel
Strand 3
D
241 250anti-parallel
Strand 4
D
234 235anti-parallel
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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
222 223first strand
Strand 2
D
214 219anti-parallel
Strand 3
D
257 262anti-parallel
Strand 4
D
270 272anti-parallel
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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
6 11first strand
Strand 2
E
21 30anti-parallel
Strand 3
E
62 70anti-parallel
Strand 4
E
50 51anti-parallel
Strand 5
E
62 70anti-parallel
Strand 6
E
55 56anti-parallel
Strand 7
E
62 70anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
44 45first strand
Strand 2
E
36 41anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
91 94anti-parallel
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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 9 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
57 59first strand
Strand 5
H
45 51anti-parallel
Strand 6
H
34 39anti-parallel
Strand 7
H
88 95anti-parallel
Strand 8
H
100 103anti-parallel
Strand 9
H
88 95anti-parallel
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There are 7 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
120 124first strand
Strand 2
H
137 147anti-parallel
Strand 3
H
185 194anti-parallel
Strand 4
H
171 173anti-parallel
Strand 5
H
185 194anti-parallel
Strand 6
H
177 178anti-parallel
Strand 7
H
185 194anti-parallel
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There are 3 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
153 157first strand
Strand 2
H
207 212anti-parallel
Strand 3
H
217 222anti-parallel
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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
3 7first strand
Strand 2
I
18 25anti-parallel
Strand 3
I
77 82anti-parallel
Strand 4
I
67 72anti-parallel
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There are 9 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
11 12first strand
Strand 2
I
107 111parallel
Strand 3
I
88 95anti-parallel
Strand 4
I
57 59first strand
Strand 5
I
45 51anti-parallel
Strand 6
I
34 39anti-parallel
Strand 7
I
88 95anti-parallel
Strand 8
I
100 103anti-parallel
Strand 9
I
88 95anti-parallel
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There are 7 strands in IC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
120 124first strand
Strand 2
I
137 147anti-parallel
Strand 3
I
185 194anti-parallel
Strand 4
I
171 173anti-parallel
Strand 5
I
185 194anti-parallel
Strand 6
I
177 178anti-parallel
Strand 7
I
185 194anti-parallel
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There are 3 strands in ID sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
153 157first strand
Strand 2
I
207 212anti-parallel
Strand 3
I
217 222anti-parallel
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There are 8 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
9 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 92anti-parallel
Strand 4
L
45 48first strand
Strand 5
L
34 38anti-parallel
Strand 6
L
84 92anti-parallel
Strand 7
L
95 98anti-parallel
Strand 8
L
84 92anti-parallel
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There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
19 24first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 67anti-parallel
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There are 7 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
114 118first strand
Strand 2
L
130 139anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
159 161anti-parallel
Strand 5
L
173 181anti-parallel
Strand 6
L
165 166anti-parallel
Strand 7
L
173 181anti-parallel
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There are 4 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
153 155first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
192 198anti-parallel
Strand 4
L
203 209anti-parallel
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There are 8 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
9 13first strand
Strand 2
M
102 106parallel
Strand 3
M
84 92anti-parallel
Strand 4
M
45 48first strand
Strand 5
M
34 38anti-parallel
Strand 6
M
84 92anti-parallel
Strand 7
M
95 98anti-parallel
Strand 8
M
84 92anti-parallel
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There are 3 strands in MB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
19 24first strand
Strand 2
M
70 75anti-parallel
Strand 3
M
62 67anti-parallel
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There are 7 strands in MC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
114 118first strand
Strand 2
M
130 139anti-parallel
Strand 3
M
173 181anti-parallel
Strand 4
M
159 161anti-parallel
Strand 5
M
173 181anti-parallel
Strand 6
M
165 166anti-parallel
Strand 7
M
173 181anti-parallel
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There are 4 strands in MD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
153 155first strand
Strand 2
M
145 150anti-parallel
Strand 3
M
192 198anti-parallel
Strand 4
M
203 209anti-parallel
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