Analysis of interatomic Contacts of Structural Units in PDB entry:
1W8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1W8N entry

There is 1 chain in PDB entry 1W8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 47ARG 647
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1W8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
190 193Right-handed 310
Helix 2
2
A
325 329Right-handed 310
Helix 3
3
A
397 402Right-handed alpha
Helix 4
4
A
505 509Right-handed 310
Helix 5
5
A
525 531Right-handed 310
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There are 11 sheets in PDB entry 1W8N. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 58first strand
Strand 2
A
390 396anti-parallel
Strand 3
A
381 385anti-parallel
Strand 4
A
371 375anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 74first strand
Strand 2
A
80 86anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
115 118anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
171 177anti-parallel
Strand 3
A
143 150anti-parallel
Strand 4
A
128 136anti-parallel
Strand 5
A
207 208parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
221 228anti-parallel
Strand 3
A
210 211anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
221 228anti-parallel
Strand 3
A
234 241anti-parallel
Strand 4
A
249 250anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 265first strand
Strand 2
A
271 275anti-parallel
Strand 3
A
283 289anti-parallel
Strand 4
A
300 306anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
331 336anti-parallel
Strand 3
A
343 350anti-parallel
Strand 4
A
359 367anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 409first strand
Strand 2
A
420 428anti-parallel
Strand 3
A
462 470anti-parallel
Strand 4
A
449 454anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 415first strand
Strand 2
A
493 501parallel
Strand 3
A
478 487anti-parallel
Strand 4
A
439 443anti-parallel
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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 514first strand
Strand 2
A
552 571anti-parallel
Strand 3
A
610 626anti-parallel
Strand 4
A
582 588anti-parallel
Strand 5
A
595 602anti-parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 514first strand
Strand 2
A
552 571anti-parallel
Strand 3
A
637 645anti-parallel
Strand 4
A
538 539anti-parallel
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