Analysis of interatomic Contacts of Structural Units in PDB entry:
1WCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WCP entry

There is 1 chain in PDB entry 1WCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 1LEU 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1WCP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
23 29Right-handed alpha
Helix 2
2
A
55 73Right-handed alpha
Helix 3
3
A
171 184Right-handed alpha
Helix 4
4
A
191 202Right-handed alpha
Helix 5
5
A
218 222Right-handed 310
Helix 6
6
A
226 231Right-handed alpha
Helix 7
7
A
246 250Right-handed 310
Helix 8
8
A
253 260Right-handed alpha
Helix 9
9
A
303 308Right-handed 310
Helix 10
10
A
320 326Right-handed alpha
Helix 11
11
A
368 376Right-handed alpha
Helix 12
12
A
426 432Right-handed alpha
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There are 4 sheets in PDB entry 1WCP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
95 97first strand
Strand 2
A
34 46anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
114 117anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
95 97first strand
Strand 2
A
34 46anti-parallel
Strand 3
A
160 165anti-parallel
Strand 4
A
148 152anti-parallel
Strand 5
A
136 138anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
293 294first strand
Strand 2
A
403 409anti-parallel
Strand 3
A
394 400anti-parallel
Strand 4
A
381 385anti-parallel
Strand 5
A
363 365parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
293 294first strand
Strand 2
A
403 409anti-parallel
Strand 3
A
394 400anti-parallel
Strand 4
A
381 385anti-parallel
Strand 5
A
451 452parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il