Analysis of interatomic Contacts of Structural Units in PDB entry:
1WDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WDR entry

There are 2 chains in PDB entry 1WDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLY 287
A
 LYS 289GLY 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1WDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 9Right-handed alpha
Helix 2
2
A
31 46Right-handed alpha
Helix 3
3
A
56 60Right-handed alpha
Helix 4
4
A
69 82Right-handed alpha
Helix 5
5
A
108 118Right-handed alpha
Helix 6
6
A
137 140Right-handed 310
Helix 7
7
A
149 165Right-handed alpha
Helix 8
8
A
165 171Right-handed alpha
Helix 9
9
A
182 186Right-handed 310
Helix 10
10
A
193 197Right-handed 310
Helix 11
11
A
210 224Right-handed alpha
Helix 12
12
A
241 245Right-handed 310
Helix 13
13
A
252 255Right-handed 310
Helix 14
14
A
256 286Right-handed alpha
Helix 15
15
A
308 315Right-handed alpha
Helix 16
16
A
325 334Right-handed alpha
Helix 17
17
A
347 351Right-handed 310
Helix 18
18
A
352 356Right-handed 310
Helix 19
19
A
358 373Right-handed alpha
Helix 20
20
A
387 399Right-handed alpha
Helix 21
21
A
427 442Right-handed alpha
Helix 22
22
A
450 455Right-handed 310
Helix 23
23
A
469 476Right-handed alpha
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There are 2 sheets in PDB entry 1WDR. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
49 55parallel
Strand 3
A
85 91parallel
Strand 4
A
174 179parallel
Strand 5
A
291 295parallel
Strand 6
A
338 341parallel
Strand 7
A
377 380parallel
Strand 8
A
415 418parallel
Strand 9
A
14 17parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
130 135anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il