Analysis of interatomic Contacts of Structural Units in PDB entry:
1WL4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WL4 entry

There are 2 chains in PDB entry 1WL4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 4ILE 91
A
GLY 93GLU 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 1WL4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
29 46Right-handed alpha
Helix 2
2
A
48 52Right-handed 310
Helix 3
3
A
68 77Right-handed alpha
Helix 4
4
A
90 92Right-handed 310
Helix 5
5
A
93 108Right-handed alpha
Helix 6
6
A
145 150Right-handed alpha
Helix 7
7
A
159 172Right-handed alpha
Helix 8
8
A
174 195Right-handed alpha
Helix 9
9
A
227 233Right-handed alpha
Helix 10
10
A
266 272Right-handed alpha
Helix 11
11
A
289 295Right-handed 310
Helix 12
12
A
296 309Right-handed alpha
Helix 13
13
A
311 315Right-handed 310
Helix 14
14
A
324 336Right-handed alpha
Helix 15
15
A
338 342Right-handed 310
Helix 16
16
A
347 352Right-handed alpha
Helix 17
17
A
357 374Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1WL4. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 20first strand
Strand 2
A
255 265anti-parallel
Strand 3
A
113 121anti-parallel
Strand 4
A
54 58parallel
Strand 5
A
85 88parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 20first strand
Strand 2
A
255 265anti-parallel
Strand 3
A
8 15anti-parallel
Strand 4
A
278 287anti-parallel
Strand 5
A
388 396anti-parallel
Strand 6
A
377 384anti-parallel
Strand 7
A
317 320parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
127 128first strand
Strand 2
A
143 144anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
205 209first strand
Strand 2
A
212 216anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il