Analysis of interatomic Contacts of Structural Units in PDB entry:
1WQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WQ1 entry

There are 2 chains in PDB entry 1WQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
MET 1HIS 166
G
MET 718GLN 1037
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1WQ1. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
R
16 24Right-handed alpha
Helix 2
2
R
62 64Right-handed 310
Helix 3
3
R
68 74Right-handed alpha
Helix 4
4
R
87 104Right-handed alpha
Helix 5
5
R
127 135Right-handed alpha
Helix 6
6
R
152 164Right-handed alpha
Helix 7
7
G
720 730Right-handed 310
Helix 8
8
G
736 744Right-handed alpha
Helix 9
9
G
749 762Right-handed alpha
Helix 10
10
G
766 779Right-handed alpha
Helix 11
11
G
784 786Right-handed 310
Helix 12
12
G
794 805Right-handed alpha
Helix 13
13
G
807 823Right-handed alpha
Helix 14
14
G
841 865Right-handed alpha
Helix 15
15
G
868 884Right-handed alpha
Helix 16
16
G
891 900Right-handed alpha
Helix 17
17
G
905 910Right-handed alpha
Helix 18
18
G
924 942Right-handed alpha
Helix 19
19
G
952 975Right-handed 310
Helix 20
20
G
992 1013Right-handed alpha
Helix 21
21
G
1020 1035Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1WQ1.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
140 144first strand
Strand 2
R
111 116parallel
Strand 3
R
77 83parallel
Strand 4
R
2 10parallel
Strand 5
R
49 58parallel
Strand 6
R
37 46anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il