Analysis of interatomic Contacts of Structural Units in PDB entry:
1WUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WUF entry

There are 2 chains in PDB entry 1WUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 1000ASN 1370
B
HIS 2000ASN 2370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1WUF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1060 1071Right-handed alpha
Helix 2
2
A
1072 1079Right-handed alpha
Helix 3
3
A
1085 1092Right-handed alpha
Helix 4
4
A
1097 1116Right-handed alpha
Helix 5
5
A
1119 1124Right-handed alpha
Helix 6
6
A
1142 1157Right-handed alpha
Helix 7
7
A
1170 1179Right-handed alpha
Helix 8
8
A
1195 1197Right-handed 310
Helix 9
9
A
1198 1204Right-handed alpha
Helix 10
10
A
1205 1209Right-handed 310
Helix 11
11
A
1222 1230Right-handed alpha
Helix 12
12
A
1244 1255Right-handed alpha
Helix 13
13
A
1264 1268Right-handed 310
Helix 14
14
A
1269 1283Right-handed alpha
Helix 15
15
A
1295 1307Right-handed alpha
Helix 16
16
A
1319 1323Right-handed 310
Helix 17
17
A
1353 1359Right-handed alpha
Helix 18
18
B
2060 2071Right-handed alpha
Helix 19
19
B
2072 2079Right-handed alpha
Helix 20
20
B
2085 2091Right-handed alpha
Helix 21
21
B
2097 2116Right-handed alpha
Helix 22
22
B
2119 2124Right-handed alpha
Helix 23
23
B
2142 2157Right-handed alpha
Helix 24
24
B
2170 2179Right-handed alpha
Helix 25
25
B
2195 2197Right-handed 310
Helix 26
26
B
2198 2207Right-handed alpha
Helix 27
27
B
2222 2230Right-handed alpha
Helix 28
28
B
2244 2255Right-handed alpha
Helix 29
29
B
2264 2268Right-handed 310
Helix 30
30
B
2269 2283Right-handed alpha
Helix 31
31
B
2295 2307Right-handed alpha
Helix 32
32
B
2319 2323Right-handed 310
Helix 33
33
B
2353 2359Right-handed alpha
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There are 8 sheets in PDB entry 1WUF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1001 1002first strand
Strand 2
A
1080 1081anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1043 1048first strand
Strand 2
A
1024 1037anti-parallel
Strand 3
A
1005 1021anti-parallel
Strand 4
A
1361 1368anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1130 1132first strand
Strand 2
A
1339 1341anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1135 1137first strand
Strand 2
A
1160 1164parallel
Strand 3
A
1185 1189parallel
Strand 4
A
1212 1214parallel
Strand 5
A
1235 1238parallel
Strand 6
A
1259 1262parallel
Strand 7
A
1286 1289parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2001 2002first strand
Strand 2
B
2080 2081anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2043 2048first strand
Strand 2
B
2024 2037anti-parallel
Strand 3
B
2005 2021anti-parallel
Strand 4
B
2361 2368anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2130 2132first strand
Strand 2
B
2339 2341anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2135 2137first strand
Strand 2
B
2160 2164parallel
Strand 3
B
2185 2189parallel
Strand 4
B
2212 2214parallel
Strand 5
B
2235 2238parallel
Strand 6
B
2259 2262parallel
Strand 7
B
2286 2289parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il