Analysis of interatomic Contacts of Structural Units in PDB entry:
1WXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WXR entry

There is 1 chain in PDB entry 1WXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 1ASN 1048
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1WXR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 17Right-handed alpha
Helix 2
2
A
19 23Right-handed 310
Helix 3
3
A
127 131Right-handed 310
Helix 4
4
A
191 196Right-handed alpha
Helix 5
5
A
244 254Right-handed alpha
Helix 6
6
A
263 267Right-handed 310
Helix 7
7
A
299 303Right-handed 310
Helix 8
8
A
432 434Right-handed 310
Helix 9
9
A
483 487Right-handed 310
Helix 10
10
A
543 556Right-handed alpha
Helix 11
11
A
616 626Right-handed alpha
Helix 12
12
A
709 713Right-handed 310
Helix 13
13
A
856 866Right-handed alpha
Helix 14
14
A
984 986Right-handed 310
Helix 15
15
A
1034 1038Right-handed 310
Helix 16
16
A
1039 1048Right-handed alpha
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There are 13 sheets in PDB entry 1WXR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 4first strand
Strand 2
A
146 149parallel
Strand 3
A
155 159anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 32first strand
Strand 2
A
38 42anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 64first strand
Strand 2
A
67 69anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 80first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
106 107anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
166 170first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
210 215anti-parallel
Strand 4
A
220 230anti-parallel
Strand 5
A
238 242anti-parallel
Strand 6
A
181 184anti-parallel
Strand 7
A
174 176anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
260 261first strand
Strand 2
A
306 309parallel
Strand 3
A
327 330parallel
Strand 4
A
348 351parallel
Strand 5
A
368 372parallel
Strand 6
A
388 391parallel
Strand 7
A
414 416parallel
Strand 8
A
436 438parallel
Strand 9
A
458 459parallel
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There are 11 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
288 293first strand
Strand 2
A
280 285anti-parallel
Strand 3
A
270 274anti-parallel
Strand 4
A
313 317parallel
Strand 5
A
334 338parallel
Strand 6
A
356 359parallel
Strand 7
A
376 379parallel
Strand 8
A
395 398parallel
Strand 9
A
422 425parallel
Strand 10
A
443 446parallel
Strand 11
A
464 467parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
321 322first strand
Strand 2
A
344 345parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
452 454first strand
Strand 2
A
476 478parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
489 490first strand
Strand 2
A
503 508parallel
Strand 3
A
513 519anti-parallel
Strand 4
A
537 539anti-parallel
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There are 52 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
560 562first strand
Strand 2
A
583 586parallel
Strand 3
A
602 605parallel
Strand 4
A
659 662parallel
Strand 5
A
678 681parallel
Strand 6
A
727 730parallel
Strand 7
A
744 747parallel
Strand 8
A
763 766parallel
Strand 9
A
783 787parallel
Strand 10
A
807 817parallel
Strand 11
A
829 838parallel
Strand 12
A
877 887parallel
Strand 13
A
897 905parallel
Strand 14
A
920 929parallel
Strand 15
A
944 954parallel
Strand 16
A
974 980parallel
Strand 17
A
1012 1021anti-parallel
Strand 18
A
1001 1007anti-parallel
Strand 19
A
1012 1021anti-parallel
Strand 20
A
974 980anti-parallel
Strand 21
A
944 954parallel
Strand 22
A
920 929parallel
Strand 23
A
897 905parallel
Strand 24
A
877 887parallel
Strand 25
A
842 845parallel
Strand 26
A
822 825parallel
Strand 27
A
790 793parallel
Strand 28
A
771 774parallel
Strand 29
A
752 754parallel
Strand 30
A
733 741parallel
Strand 31
A
715 723parallel
Strand 32
A
666 675parallel
Strand 33
A
646 656parallel
Strand 34
A
589 599parallel
Strand 35
A
565 568parallel
Strand 36
A
589 599parallel
Strand 37
A
572 575parallel
Strand 38
A
589 599parallel
Strand 39
A
646 656parallel
Strand 40
A
666 675parallel
Strand 41
A
715 723parallel
Strand 42
A
733 741parallel
Strand 43
A
757 760parallel
Strand 44
A
778 780parallel
Strand 45
A
807 817parallel
Strand 46
A
829 838parallel
Strand 47
A
871 875parallel
Strand 48
A
889 893parallel
Strand 49
A
908 911parallel
Strand 50
A
932 936parallel
Strand 51
A
956 961parallel
Strand 52
A
988 990parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
608 609first strand
Strand 2
A
643 644anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
685 689first strand
Strand 2
A
700 704anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il