Analysis of interatomic Contacts of Structural Units in PDB entry:
1WYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1WYK entry

There are 4 chains in PDB entry 1WYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 113TRP 264
B
MET 113TRP 264
C
MET 113TRP 264
D
MET 113TRP 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1WYK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
151 153Right-handed 310
Helix 2
2
A
160 162Right-handed 310
Helix 3
3
A
171 173Right-handed 310
Helix 4
4
B
151 153Right-handed 310
Helix 5
5
B
171 173Right-handed 310
Helix 6
6
C
151 153Right-handed 310
Helix 7
7
C
171 173Right-handed 310
Helix 8
8
D
151 153Right-handed 310
Helix 9
9
D
160 162Right-handed 310
Helix 10
10
D
171 175Right-handed 310
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There are 16 sheets in PDB entry 1WYK. Click on sheet of interest to get list of strands forming it: A, 1B, 2B, 3B, C, 1D, 2D, 3D, E, 1F, 2F, 3F, G, 1H, 2H, 3H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
157 159first strand
Strand 2
A
164 168anti-parallel
Strand 3
A
135 139anti-parallel
Strand 4
A
125 132anti-parallel
Strand 5
A
115 119anti-parallel
Strand 6
A
145 147anti-parallel
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There are 5 strands in 1B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
187 191first strand
Strand 2
A
194 199anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
239 245anti-parallel
Strand 5
A
253 256anti-parallel
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There are 6 strands in 2B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
187 191first strand
Strand 2
A
194 199anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
239 245anti-parallel
Strand 5
A
226 236anti-parallel
Strand 6
A
261 263anti-parallel
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There are 6 strands in 3B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
187 191first strand
Strand 2
A
194 199anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
239 245anti-parallel
Strand 5
A
226 236anti-parallel
Strand 6
A
218 220anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
157 159first strand
Strand 2
B
164 168anti-parallel
Strand 3
B
135 139anti-parallel
Strand 4
B
125 132anti-parallel
Strand 5
B
115 119anti-parallel
Strand 6
B
145 147anti-parallel
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There are 5 strands in 1D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 191first strand
Strand 2
B
194 199anti-parallel
Strand 3
B
202 206anti-parallel
Strand 4
B
239 245anti-parallel
Strand 5
B
253 256anti-parallel
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There are 6 strands in 2D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 191first strand
Strand 2
B
194 199anti-parallel
Strand 3
B
202 206anti-parallel
Strand 4
B
239 245anti-parallel
Strand 5
B
226 236anti-parallel
Strand 6
B
261 263anti-parallel
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There are 6 strands in 3D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 191first strand
Strand 2
B
194 199anti-parallel
Strand 3
B
202 206anti-parallel
Strand 4
B
239 245anti-parallel
Strand 5
B
226 236anti-parallel
Strand 6
B
218 220anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
157 159first strand
Strand 2
C
164 168anti-parallel
Strand 3
C
135 139anti-parallel
Strand 4
C
125 132anti-parallel
Strand 5
C
115 119anti-parallel
Strand 6
C
145 147anti-parallel
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There are 5 strands in 1F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
187 191first strand
Strand 2
C
194 199anti-parallel
Strand 3
C
202 206anti-parallel
Strand 4
C
239 245anti-parallel
Strand 5
C
253 256anti-parallel
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There are 6 strands in 2F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
187 191first strand
Strand 2
C
194 199anti-parallel
Strand 3
C
202 206anti-parallel
Strand 4
C
239 245anti-parallel
Strand 5
C
226 236anti-parallel
Strand 6
C
261 263anti-parallel
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There are 6 strands in 3F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
187 191first strand
Strand 2
C
194 199anti-parallel
Strand 3
C
202 206anti-parallel
Strand 4
C
239 245anti-parallel
Strand 5
C
226 236anti-parallel
Strand 6
C
218 220anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
157 159first strand
Strand 2
D
164 168anti-parallel
Strand 3
D
135 139anti-parallel
Strand 4
D
125 132anti-parallel
Strand 5
D
115 119anti-parallel
Strand 6
D
145 147anti-parallel
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There are 5 strands in 1H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
187 191first strand
Strand 2
D
194 199anti-parallel
Strand 3
D
202 206anti-parallel
Strand 4
D
239 245anti-parallel
Strand 5
D
253 256anti-parallel
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There are 6 strands in 2H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
187 191first strand
Strand 2
D
194 199anti-parallel
Strand 3
D
202 206anti-parallel
Strand 4
D
239 245anti-parallel
Strand 5
D
226 236anti-parallel
Strand 6
D
261 263anti-parallel
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There are 6 strands in 3H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
187 191first strand
Strand 2
D
194 199anti-parallel
Strand 3
D
202 206anti-parallel
Strand 4
D
239 245anti-parallel
Strand 5
D
226 236anti-parallel
Strand 6
D
218 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il