Analysis of interatomic Contacts of Structural Units in PDB entry:
1X29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1X29 entry

There are 2 chains in PDB entry 1X29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 5LEU 409
B
MET 5LEU 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1X29. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
17 27Right-handed alpha
Helix 2
2
A
50 64Right-handed alpha
Helix 3
3
A
76 89Right-handed alpha
Helix 4
4
A
92 97Right-handed alpha
Helix 5
5
A
106 123Right-handed alpha
Helix 6
6
A
141 150Right-handed alpha
Helix 7
7
A
169 177Right-handed alpha
Helix 8
8
A
201 216Right-handed alpha
Helix 9
9
A
234 236Right-handed 310
Helix 10
10
A
237 245Right-handed alpha
Helix 11
11
A
262 266Right-handed 310
Helix 12
12
A
276 293Right-handed alpha
Helix 13
13
A
299 312Right-handed alpha
Helix 14
14
A
312 344Right-handed alpha
Helix 15
15
A
350 356Right-handed 310
Helix 16
16
A
366 378Right-handed alpha
Helix 17
17
A
390 392Right-handed 310
Helix 18
18
A
396 409Right-handed alpha
Helix 19
19
B
17 27Right-handed alpha
Helix 20
20
B
50 64Right-handed alpha
Helix 21
21
B
76 89Right-handed alpha
Helix 22
22
B
92 97Right-handed alpha
Helix 23
23
B
106 123Right-handed alpha
Helix 24
24
B
141 150Right-handed alpha
Helix 25
25
B
169 178Right-handed alpha
Helix 26
26
B
201 216Right-handed alpha
Helix 27
27
B
231 245Right-handed alpha
Helix 28
28
B
262 266Right-handed 310
Helix 29
29
B
276 293Right-handed alpha
Helix 30
30
B
299 312Right-handed alpha
Helix 31
31
B
312 344Right-handed alpha
Helix 32
32
B
350 356Right-handed 310
Helix 33
33
B
366 378Right-handed alpha
Helix 34
34
B
390 392Right-handed 310
Helix 35
35
B
396 409Right-handed alpha
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There are 8 sheets in PDB entry 1X29. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
33 34first strand
Strand 2
A
379 380parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
100 105first strand
Strand 2
A
268 273anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
218 223parallel
Strand 5
A
185 189parallel
Strand 6
A
129 137parallel
Strand 7
A
154 159parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 162first strand
Strand 2
A
167 168anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
360 362first strand
Strand 2
A
386 388anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
33 34first strand
Strand 2
B
379 380parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 105first strand
Strand 2
B
268 273anti-parallel
Strand 3
B
250 255anti-parallel
Strand 4
B
218 223parallel
Strand 5
B
185 189parallel
Strand 6
B
129 137parallel
Strand 7
B
154 159parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
161 162first strand
Strand 2
B
167 168anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
360 362first strand
Strand 2
B
386 388anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il