Analysis of interatomic Contacts of Structural Units in PDB entry:
1XAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1XAJ entry

There are 2 chains in PDB entry 1XAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 352
B
 MET 1TYR 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1XAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
24 29Right-handed alpha
Helix 3
3
A
40 47Right-handed alpha
Helix 4
4
A
66 70Right-handed 310
Helix 5
5
A
72 85Right-handed alpha
Helix 6
6
A
99 113Right-handed alpha
Helix 7
7
A
114 116Right-handed 310
Helix 8
8
A
127 132Right-handed alpha
Helix 9
9
A
162 167Right-handed 310
Helix 10
10
A
168 185Right-handed alpha
Helix 11
11
A
186 198Right-handed alpha
Helix 12
12
A
200 206Right-handed alpha
Helix 13
13
A
209 228Right-handed alpha
Helix 14
14
A
233 240Right-handed 310
Helix 15
15
A
241 253Right-handed alpha
Helix 16
16
A
255 276Right-handed alpha
Helix 17
17
A
280 292Right-handed alpha
Helix 18
18
A
338 349Right-handed alpha
Helix 19
19
A
350 352Right-handed 310
Helix 20
20
B
19 23Right-handed 310
Helix 21
21
B
24 29Right-handed alpha
Helix 22
22
B
40 47Right-handed alpha
Helix 23
23
B
66 70Right-handed 310
Helix 24
24
B
72 85Right-handed alpha
Helix 25
25
B
99 113Right-handed alpha
Helix 26
26
B
114 116Right-handed 310
Helix 27
27
B
127 132Right-handed alpha
Helix 28
28
B
162 167Right-handed 310
Helix 29
29
B
168 185Right-handed alpha
Helix 30
30
B
186 196Right-handed alpha
Helix 31
31
B
200 207Right-handed alpha
Helix 32
32
B
209 228Right-handed alpha
Helix 33
33
B
233 240Right-handed 310
Helix 34
34
B
241 253Right-handed alpha
Helix 35
35
B
255 276Right-handed alpha
Helix 36
36
B
280 292Right-handed alpha
Helix 37
37
B
338 349Right-handed alpha
Helix 38
38
B
350 352Right-handed 310
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There are 6 sheets in PDB entry 1XAJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
156 160parallel
Strand 4
A
118 123parallel
Strand 5
A
93 98parallel
Strand 6
A
34 39parallel
Strand 7
A
59 64parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 141first strand
Strand 2
A
144 151anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
331 332anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
13 17anti-parallel
Strand 3
B
156 160parallel
Strand 4
B
118 123parallel
Strand 5
B
93 98parallel
Strand 6
B
34 39parallel
Strand 7
B
59 64parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 141first strand
Strand 2
B
144 151anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 328first strand
Strand 2
B
331 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il