Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y0Y entry

There are 2 chains in PDB entry 1Y0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 6ILE 353
B
 VAL 2ASP 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1Y0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
24 27Right-handed 310
Helix 3
3
A
28 38Right-handed alpha
Helix 4
4
A
39 41Right-handed 310
Helix 5
5
A
94 98Right-handed 310
Helix 6
6
A
135 139Right-handed 310
Helix 7
7
A
147 154Right-handed alpha
Helix 8
8
A
180 197Right-handed alpha
Helix 9
9
A
216 227Right-handed alpha
Helix 10
10
A
246 250Right-handed 310
Helix 11
11
A
270 284Right-handed alpha
Helix 12
12
A
299 304Right-handed alpha
Helix 13
13
A
331 348Right-handed alpha
Helix 14
14
A
349 351Right-handed 310
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There are 4 sheets in PDB entry 1Y0Y. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
203 209anti-parallel
Strand 4
A
62 68parallel
Strand 5
A
230 238parallel
Strand 6
A
312 319parallel
Strand 7
A
258 264anti-parallel
Strand 8
A
267 268anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
203 209anti-parallel
Strand 4
A
62 68parallel
Strand 5
A
230 238parallel
Strand 6
A
312 319parallel
Strand 7
A
258 264anti-parallel
Strand 8
A
288 292parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 79first strand
Strand 2
A
85 90anti-parallel
Strand 3
A
140 142anti-parallel
Strand 4
A
111 118anti-parallel
Strand 5
A
102 108anti-parallel
Strand 6
A
161 164anti-parallel
Strand 7
A
73 79anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
175 178anti-parallel
Strand 3
A
327 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il