Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y24


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y24 entry

There is 1 chain in PDB entry 1Y24 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 36GLY 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1Y24. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 77Right-handed alpha
Helix 2
2
A
95 99Right-handed 310
Helix 3
3
A
111 124Right-handed alpha
Helix 4
4
A
156 168Right-handed alpha
Helix 5
5
A
168 174Right-handed alpha
Helix 6
6
A
189 192Right-handed 310
Helix 7
7
A
193 212Right-handed alpha
Helix 8
8
A
229 241Right-handed alpha
Helix 9
9
A
272 285Right-handed alpha
Helix 10
10
A
314 325Right-handed alpha
Helix 11
11
A
326 331Right-handed 310
Helix 12
12
A
368 375Right-handed alpha
Helix 13
13
A
376 379Right-handed 310
Helix 14
14
A
443 449Right-handed alpha
Helix 15
15
A
458 463Right-handed alpha
Helix 16
16
A
464 469Right-handed alpha
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There are 8 sheets in PDB entry 1Y24. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
417 424parallel
Strand 3
A
484 491anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
127 128parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
177 178parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
147 148anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 224first strand
Strand 2
A
248 253parallel
Strand 3
A
295 301parallel
Strand 4
A
333 336parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
264 265anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
365 366anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 387first strand
Strand 2
A
390 394anti-parallel
Strand 3
A
400 405anti-parallel
Strand 4
A
496 503anti-parallel
Strand 5
A
430 436anti-parallel
Strand 6
A
472 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il