Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y6F entry

There are 5 chains in PDB entry 1Y6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 T 6
C
 A 8 G 13
D
 C 1 C 13
A
 MET 998LYS 1400
B
 GLY 999LYS 1400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 1Y6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1014 1030Right-handed alpha
Helix 2
2
A
1060 1063Right-handed 310
Helix 3
3
A
1064 1073Right-handed alpha
Helix 4
4
A
1089 1100Right-handed alpha
Helix 5
5
A
1117 1122Right-handed alpha
Helix 6
6
A
1126 1134Right-handed alpha
Helix 7
7
A
1144 1149Right-handed alpha
Helix 8
8
A
1149 1155Right-handed alpha
Helix 9
9
A
1179 1188Right-handed alpha
Helix 10
10
A
1190 1194Right-handed 310
Helix 11
11
A
1206 1209Right-handed 310
Helix 12
12
A
1210 1221Right-handed alpha
Helix 13
13
A
1222 1226Right-handed 310
Helix 14
14
A
1237 1239Right-handed 310
Helix 15
15
A
1240 1246Right-handed alpha
Helix 16
16
A
1257 1261Right-handed 310
Helix 17
17
A
1276 1285Right-handed alpha
Helix 18
18
A
1297 1301Right-handed 310
Helix 19
19
A
1306 1315Right-handed alpha
Helix 20
20
A
1323 1329Right-handed alpha
Helix 21
21
A
1337 1341Right-handed 310
Helix 22
22
A
1352 1366Right-handed alpha
Helix 23
23
A
1366 1386Right-handed alpha
Helix 24
24
A
1386 1400Right-handed alpha
Helix 25
25
B
1014 1030Right-handed alpha
Helix 26
26
B
1064 1073Right-handed alpha
Helix 27
27
B
1092 1102Right-handed alpha
Helix 28
28
B
1117 1122Right-handed alpha
Helix 29
29
B
1126 1133Right-handed alpha
Helix 30
30
B
1144 1149Right-handed alpha
Helix 31
31
B
1149 1155Right-handed alpha
Helix 32
32
B
1179 1188Right-handed alpha
Helix 33
33
B
1190 1194Right-handed 310
Helix 34
34
B
1206 1209Right-handed 310
Helix 35
35
B
1210 1221Right-handed alpha
Helix 36
36
B
1238 1245Right-handed alpha
Helix 37
37
B
1254 1261Right-handed 310
Helix 38
38
B
1276 1286Right-handed alpha
Helix 39
39
B
1297 1301Right-handed 310
Helix 40
40
B
1306 1315Right-handed alpha
Helix 41
41
B
1323 1329Right-handed alpha
Helix 42
42
B
1352 1364Right-handed alpha
Helix 43
43
B
1366 1386Right-handed alpha
Helix 44
44
B
1386 1400Right-handed alpha
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There are 4 sheets in PDB entry 1Y6F. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1057 1059first strand
Strand 2
A
1033 1039parallel
Strand 3
A
1002 1007parallel
Strand 4
A
1077 1082parallel
Strand 5
A
1108 1112parallel
Strand 6
A
1136 1139parallel
Strand 7
A
1172 1173parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1250 1253first strand
Strand 2
A
1269 1272parallel
Strand 3
A
1228 1232parallel
Strand 4
A
1195 1202parallel
Strand 5
A
1287 1292parallel
Strand 6
A
1318 1322parallel
Strand 7
A
1346 1348parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1057 1059first strand
Strand 2
B
1033 1039parallel
Strand 3
B
1002 1007parallel
Strand 4
B
1077 1082parallel
Strand 5
B
1108 1113parallel
Strand 6
B
1136 1139parallel
Strand 7
B
1172 1173parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1250 1253first strand
Strand 2
B
1269 1272parallel
Strand 3
B
1228 1232parallel
Strand 4
B
1195 1202parallel
Strand 5
B
1287 1292parallel
Strand 6
B
1318 1322parallel
Strand 7
B
1346 1348parallel
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