Analysis of interatomic Contacts of Structural Units in PDB entry:
1Y8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Y8C entry

There is 1 chain in PDB entry 1Y8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLY 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1Y8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
20 34Right-handed alpha
Helix 3
3
A
52 57Right-handed alpha
Helix 4
4
A
58 60Right-handed 310
Helix 5
5
A
69 83Right-handed alpha
Helix 6
6
A
93 97Right-handed 310
Helix 7
7
A
111 116Right-handed 310
Helix 8
8
A
118 131Right-handed alpha
Helix 9
9
A
145 151Right-handed alpha
Helix 10
10
A
205 216Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1Y8C. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
62 66parallel
Strand 3
A
41 45parallel
Strand 4
A
103 108parallel
Strand 5
A
133 144parallel
Strand 6
A
238 245anti-parallel
Strand 7
A
218 225anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
165 174anti-parallel
Strand 3
A
177 187anti-parallel
Strand 4
A
192 202anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il