Analysis of interatomic Contacts of Structural Units in PDB entry:
1YO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YO8 entry

There is 1 chain in PDB entry 1YO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 551ASP 1171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1YO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
551 556Right-handed 310
Helix 2
2
A
636 641Right-handed alpha
Helix 3
3
A
773 777Right-handed 310
Helix 4
4
A
796 800Right-handed 310
Helix 5
5
A
832 836Right-handed 310
Helix 6
6
A
870 874Right-handed 310
Helix 7
7
A
906 910Right-handed 310
Helix 8
8
A
929 933Right-handed 310
Helix 9
9
A
942 946Right-handed 310
Helix 10
10
A
983 986Right-handed 310
Helix 11
11
A
1075 1084Right-handed alpha
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There are 9 sheets in PDB entry 1YO8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 566first strand
Strand 2
A
572 574anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 612first strand
Strand 2
A
617 619anti-parallel
Strand 3
A
632 633anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
646 648anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 667first strand
Strand 2
A
676 680anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 686first strand
Strand 2
A
691 693anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
962 966first strand
Strand 2
A
997 1005anti-parallel
Strand 3
A
1148 1155anti-parallel
Strand 4
A
1024 1033anti-parallel
Strand 5
A
1036 1043anti-parallel
Strand 6
A
1062 1069anti-parallel
Strand 7
A
1092 1097anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
979 982first strand
Strand 2
A
987 990anti-parallel
Strand 3
A
1160 1169anti-parallel
Strand 4
A
1008 1016anti-parallel
Strand 5
A
1110 1116anti-parallel
Strand 6
A
1122 1129anti-parallel
Strand 7
A
1132 1136anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
979 982first strand
Strand 2
A
987 990anti-parallel
Strand 3
A
1160 1169anti-parallel
Strand 4
A
1008 1016anti-parallel
Strand 5
A
1110 1116anti-parallel
Strand 6
A
1122 1129anti-parallel
Strand 7
A
1140 1141anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1047 1048first strand
Strand 2
A
1058 1059anti-parallel
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