Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1YPV entry
There are 5 chains in PDB entry 1YPV
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
VAL 3 | ARG 42 |
A
|
GLY 44 | MET 179 |
A
|
ALA 181 | PRO 194 |
A
|
HIS 196 | LEU 198 |
A
|
GLN 200 | GLU 310 |
Back to top of page
There are 9
helices in PDB entry 1YPV. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 29 |
44 | Right-handed alpha |
Helix 2 |
2 | A
| 80 |
93 | Right-handed alpha |
Helix 3 |
3 | A
| 98 |
103 | Right-handed alpha |
Helix 4 |
4 | A
| 134 |
141 | Right-handed alpha |
Helix 5 |
5 | A
| 159 |
171 | Right-handed alpha |
Helix 6 |
6 | A
| 221 |
241 | Right-handed alpha |
Helix 7 |
7 | A
| 261 |
269 | Right-handed alpha |
Helix 8 |
8 | A
| 287 |
291 | Right-handed 310 |
Helix 9 |
9 | A
| 292 |
294 | Right-handed 310 |
Back to top of page
There are
2 sheets in PDB entry 1YPV. Click on sheet of
interest to get list of strands forming it:
A,
B,
There are 6
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 45 |
48 | first strand |
Strand 2 |
A
| 54 |
66 | anti-parallel |
Strand 3 |
A
| 244 |
258 | anti-parallel |
Strand 4 |
A
| 207 |
218 | parallel |
Strand 5 |
A
| 197 |
204 | anti-parallel |
Strand 6 |
A
| 178 |
181 | anti-parallel |
Back to list of sheets
Back to top of page
There are 2
strands in B sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 278 |
281 | first strand |
Strand 2 |
A
| 296 |
299 | anti-parallel |
Back to list of sheets
Back to top of page
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il