Analysis of interatomic Contacts of Structural Units in PDB entry:
1YQZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YQZ entry

There are 2 chains in PDB entry 1YQZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LYS 438
B
 PRO 2LYS 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1YQZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
44 50Right-handed alpha
Helix 4
4
A
55 60Right-handed 310
Helix 5
5
A
63 72Right-handed alpha
Helix 6
6
A
132 147Right-handed alpha
Helix 7
7
A
157 171Right-handed alpha
Helix 8
8
A
188 191Right-handed 310
Helix 9
9
A
192 202Right-handed alpha
Helix 10
10
A
243 247Right-handed 310
Helix 11
11
A
294 311Right-handed alpha
Helix 12
12
A
339 346Right-handed 310
Helix 13
13
A
391 405Right-handed alpha
Helix 14
14
A
409 415Right-handed 310
Helix 15
15
A
428 436Right-handed alpha
Helix 16
16
B
12 24Right-handed alpha
Helix 17
17
B
41 43Right-handed 310
Helix 18
18
B
44 50Right-handed alpha
Helix 19
19
B
55 60Right-handed alpha
Helix 20
20
B
63 72Right-handed alpha
Helix 21
21
B
132 147Right-handed alpha
Helix 22
22
B
157 171Right-handed alpha
Helix 23
23
B
188 191Right-handed 310
Helix 24
24
B
192 202Right-handed alpha
Helix 25
25
B
243 247Right-handed 310
Helix 26
26
B
294 311Right-handed alpha
Helix 27
27
B
339 346Right-handed 310
Helix 28
28
B
391 405Right-handed alpha
Helix 29
29
B
409 415Right-handed 310
Helix 30
30
B
428 437Right-handed alpha
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There are 14 sheets in PDB entry 1YQZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
29 33parallel
Strand 3
A
4 7parallel
Strand 4
A
108 111parallel
Strand 5
A
272 274parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 85first strand
Strand 2
A
90 95anti-parallel
Strand 3
A
100 105anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
239 241anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
232 235parallel
Strand 3
A
150 154parallel
Strand 4
A
173 178parallel
Strand 5
A
206 208parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 216first strand
Strand 2
A
219 222anti-parallel
Strand 3
A
227 229anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
279 282parallel
Strand 3
A
289 290anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 328first strand
Strand 2
A
331 337anti-parallel
Strand 3
A
381 388anti-parallel
Strand 4
A
367 375anti-parallel
Strand 5
A
348 356anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
29 32parallel
Strand 3
B
4 7parallel
Strand 4
B
108 111parallel
Strand 5
B
272 274parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 85first strand
Strand 2
B
90 95anti-parallel
Strand 3
B
100 105anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
239 241anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
232 235parallel
Strand 3
B
150 154parallel
Strand 4
B
173 178parallel
Strand 5
B
206 208parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 216first strand
Strand 2
B
219 222anti-parallel
Strand 3
B
227 229anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
279 282parallel
Strand 3
B
289 290anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 328first strand
Strand 2
B
331 337anti-parallel
Strand 3
B
381 388anti-parallel
Strand 4
B
367 375anti-parallel
Strand 5
B
348 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il