Analysis of interatomic Contacts of Structural Units in PDB entry:
1YR2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YR2 entry

There is 1 chain in PDB entry 1YR2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 38HIS 738
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1YR2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 66Right-handed 310
Helix 2
2
A
71 90Right-handed alpha
Helix 3
3
A
94 106Right-handed alpha
Helix 4
4
A
153 157Right-handed 310
Helix 5
5
A
253 257Right-handed 310
Helix 6
6
A
455 457Right-handed 310
Helix 7
7
A
507 515Right-handed alpha
Helix 8
8
A
531 538Right-handed alpha
Helix 9
9
A
539 542Right-handed 310
Helix 10
10
A
543 561Right-handed alpha
Helix 11
11
A
575 588Right-handed alpha
Helix 12
12
A
589 592Right-handed 310
Helix 13
13
A
606 610Right-handed 310
Helix 14
14
A
612 615Right-handed 310
Helix 15
15
A
616 621Right-handed alpha
Helix 16
16
A
625 634Right-handed alpha
Helix 17
17
A
636 640Right-handed 310
Helix 18
18
A
663 676Right-handed alpha
Helix 19
19
A
698 718Right-handed alpha
Helix 20
20
A
725 736Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 1YR2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
55 58anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
120 126anti-parallel
Strand 3
A
115 117anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
120 126anti-parallel
Strand 3
A
134 139anti-parallel
Strand 4
A
149 152anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 170first strand
Strand 2
A
176 183anti-parallel
Strand 3
A
188 195anti-parallel
Strand 4
A
201 210anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
221 226anti-parallel
Strand 3
A
244 249anti-parallel
Strand 4
A
258 261anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 275first strand
Strand 2
A
281 287anti-parallel
Strand 3
A
295 302anti-parallel
Strand 4
A
305 306anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 275first strand
Strand 2
A
281 287anti-parallel
Strand 3
A
295 302anti-parallel
Strand 4
A
310 313anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 326first strand
Strand 2
A
329 334anti-parallel
Strand 3
A
342 347anti-parallel
Strand 4
A
354 359anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 372first strand
Strand 2
A
375 382anti-parallel
Strand 3
A
385 392anti-parallel
Strand 4
A
397 400anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 413first strand
Strand 2
A
421 427anti-parallel
Strand 3
A
430 438anti-parallel
Strand 4
A
443 446anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 467first strand
Strand 2
A
473 481anti-parallel
Strand 3
A
519 523anti-parallel
Strand 4
A
490 493parallel
Strand 5
A
569 574parallel
Strand 6
A
594 598parallel
Strand 7
A
649 655parallel
Strand 8
A
683 688parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il