Analysis of interatomic Contacts of Structural Units in PDB entry:
1YVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YVP entry

There are 12 chains in PDB entry 1YVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 C 2
C
 G 4 A 10
D
 G 3 C 5
D
 A 7 C 10
E
 G 1 C 2
E
 G 4 A 10
F
 G 3 C 5
F
 A 7 C 10
G
 U 6 A 10
H
 G 4 A 10
A
 MET 5LEU 537
B
 THR 4LEU 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 1YVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 40Right-handed alpha
Helix 2
2
A
49 67Right-handed alpha
Helix 3
3
A
69 84Right-handed alpha
Helix 4
4
A
89 100Right-handed alpha
Helix 5
5
A
104 119Right-handed alpha
Helix 6
6
A
121 139Right-handed alpha
Helix 7
7
A
145 158Right-handed alpha
Helix 8
8
A
160 171Right-handed alpha
Helix 9
9
A
179 187Right-handed alpha
Helix 10
10
A
192 205Right-handed alpha
Helix 11
11
A
205 213Right-handed alpha
Helix 12
12
A
219 235Right-handed alpha
Helix 13
13
A
236 238Right-handed 310
Helix 14
14
A
240 252Right-handed alpha
Helix 15
15
A
254 258Right-handed 310
Helix 16
16
A
260 264Right-handed 310
Helix 17
17
A
265 275Right-handed alpha
Helix 18
18
A
277 284Right-handed alpha
Helix 19
19
A
284 291Right-handed alpha
Helix 20
20
A
298 309Right-handed alpha
Helix 21
21
A
310 317Right-handed alpha
Helix 22
22
A
320 334Right-handed alpha
Helix 23
23
A
346 361Right-handed alpha
Helix 24
24
A
378 383Right-handed 310
Helix 25
25
A
391 407Right-handed alpha
Helix 26
26
A
429 436Right-handed alpha
Helix 27
27
A
448 457Right-handed alpha
Helix 28
28
A
478 491Right-handed alpha
Helix 29
29
A
525 535Right-handed alpha
Helix 30
30
B
28 40Right-handed alpha
Helix 31
31
B
49 67Right-handed alpha
Helix 32
32
B
69 83Right-handed alpha
Helix 33
33
B
89 101Right-handed alpha
Helix 34
34
B
104 119Right-handed alpha
Helix 35
35
B
121 139Right-handed alpha
Helix 36
36
B
145 158Right-handed alpha
Helix 37
37
B
160 171Right-handed alpha
Helix 38
38
B
179 187Right-handed alpha
Helix 39
39
B
192 204Right-handed alpha
Helix 40
40
B
205 213Right-handed alpha
Helix 41
41
B
221 235Right-handed alpha
Helix 42
42
B
240 252Right-handed alpha
Helix 43
43
B
254 258Right-handed 310
Helix 44
44
B
259 264Right-handed 310
Helix 45
45
B
265 274Right-handed alpha
Helix 46
46
B
277 284Right-handed alpha
Helix 47
47
B
284 291Right-handed alpha
Helix 48
48
B
298 309Right-handed alpha
Helix 49
49
B
310 317Right-handed alpha
Helix 50
50
B
320 334Right-handed alpha
Helix 51
51
B
346 360Right-handed alpha
Helix 52
52
B
378 383Right-handed 310
Helix 53
53
B
391 407Right-handed alpha
Helix 54
54
B
429 438Right-handed alpha
Helix 55
55
B
448 457Right-handed alpha
Helix 56
56
B
478 491Right-handed alpha
Helix 57
57
B
525 535Right-handed alpha
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There are 6 sheets in PDB entry 1YVP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
506 507anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
177 178anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
410 415anti-parallel
Strand 3
A
371 376parallel
Strand 4
A
463 468parallel
Strand 5
A
495 500parallel
Strand 6
A
516 520parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
506 507anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
177 178anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 420first strand
Strand 2
B
410 415anti-parallel
Strand 3
B
371 376parallel
Strand 4
B
463 468parallel
Strand 5
B
495 500parallel
Strand 6
B
516 520parallel
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