Analysis of interatomic Contacts of Structural Units in PDB entry:
1ZDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ZDY entry

There is 1 chain in PDB entry 1ZDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ASP 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 1ZDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 21Right-handed alpha
Helix 2
2
A
26 37Right-handed alpha
Helix 3
3
A
38 41Right-handed 310
Helix 4
4
A
55 58Right-handed 310
Helix 5
5
A
68 72Right-handed 310
Helix 6
6
A
73 81Right-handed alpha
Helix 7
7
A
90 102Right-handed alpha
Helix 8
8
A
131 137Right-handed alpha
Helix 9
9
A
142 148Right-handed alpha
Helix 10
10
A
148 155Right-handed alpha
Helix 11
11
A
180 185Right-handed alpha
Helix 12
12
A
185 197Right-handed alpha
Helix 13
13
A
202 212Right-handed alpha
Helix 14
14
A
245 259Right-handed alpha
Helix 15
15
A
292 303Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 1ZDY.

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
62 67anti-parallel
Strand 3
A
106 112anti-parallel
Strand 4
A
116 123anti-parallel
Strand 5
A
160 166anti-parallel
Strand 6
A
171 176anti-parallel
Strand 7
A
214 220anti-parallel
Strand 8
A
228 235anti-parallel
Strand 9
A
270 276anti-parallel
Strand 10
A
281 290anti-parallel
Strand 11
A
48 53anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il